Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    31   0.29 
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.2  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 215 PSLQNEWLQDVNFFGEXRQRINFLFY*ILKMNLSDPDRRRYVR 87
           P+  N  L ++ +  E     N +FY  + ++LSD DR+R VR
Sbjct: 870 PNDSNITLYEILYSSEEEMPSNVIFYETMDVSLSDLDRKRLVR 912


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 294 WNAWLVLWPHKSLQSAFPVI-FLFIARTIFAERMASGCELLWGAXATN*FLVL 139
           + AW+V     SL   FP+  FLFIA   F E + +   LLW    +  F+ L
Sbjct: 46  YKAWIVCTTI-SLCCDFPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLCFITL 97


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 158 VAXAPQRSSHPEAIRSAKMVLAMNKKITGKALCKLLWGHRTNQAFHPDRKARQVTL 325
           VA       + E   S +M++ + + +T + +    WG R   A+ P   A  VTL
Sbjct: 461 VANVISLDENKELFTSVRMLITIGELLTNRIID--FWGERLVNAYGPTEAAIHVTL 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,593
Number of Sequences: 5004
Number of extensions: 48723
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)