Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K03
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.9  
SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)                       29   3.8  
SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)                       29   3.8  

>SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 729 SFNXNTF*HLIKPNLNINQMKFYIDCYLHSICMH 628
           S N  T   +I P++  NQ+ F I C+L S+C+H
Sbjct: 60  SKNAMTTITIINPSVADNQLCFIILCFLMSLCLH 93


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 41   FESSTDL*LRSSYHIDAHTYACLDRSSSFLIFNKTRN*FVAXAPQRSSHPE 193
            F + +D  +  +   DA  YACL  S + LI +      V   P+ + HPE
Sbjct: 2365 FSNQSDYVIAKATREDAGVYACLATSEAGLIQSSAATLIVNVKPEITHHPE 2415


>SB_43732| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 297 GWNAWLVLWPHKSLQSAFPVIFLFI 223
           GW + +VL+  K + SAFP I  F+
Sbjct: 240 GWKSLIVLYDGKLISSAFPCILFFV 264


>SB_25786| Best HMM Match : Rop (HMM E-Value=6.5)
          Length = 294

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 297 GWNAWLVLWPHKSLQSAFPVIFLFI 223
           GW + +VL+  K + SAFP I  F+
Sbjct: 240 GWKSLIVLYDGKLISSAFPCILFFV 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,262,595
Number of Sequences: 59808
Number of extensions: 342245
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)