Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K02
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    30   0.37 
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    28   2.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   4.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   4.5  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   6.0  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 598 SEDVKSEHYDMVTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYE 777
           +EDV  E   +   + + +  Q++   ++ P F  G    +++  + V TD     DE +
Sbjct: 282 AEDVDGEA--LAACILNKLRGQLQVVAIKAPGF--GDNRRNMLGDLAVLTDSAVFNDEID 337

Query: 778 NNIKTDGIPHL-TMSPLTTTQEDTIVVK 858
            +I+     HL +   +T T+EDTI++K
Sbjct: 338 VSIEKAQPHHLGSCGSVTVTKEDTIIMK 365


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -2

Query: 820 DSLSNAVSHQ---FLYYFHTHRLLSTRQFPQRYVTSHPTLVPPTRIQELPEYGLRF 662
           DS S +  HQ   FLY      LLS  QFP  Y T     +      ELP  GL++
Sbjct: 498 DSQSLSYIHQTLVFLYSLEIQNLLSQNQFPTVYFTKISDQINNYE-GELPTDGLKY 552


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/52 (21%), Positives = 29/52 (55%)
 Frame = +1

Query: 631 VTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYENNI 786
           V+ +++ IN+ +   +L  P F +G   + +  ++ V  DE+  +  Y++++
Sbjct: 38  VSHIKNAINVSLPTALLRRPSFDIGKVFACIKCNVKVSLDEINAIFLYDSSM 89


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 820 DSLSNAVSHQFLYYFHTHRLLSTRQFPQRYVTSHPTLVP 704
           +SLS+   HQ  + FHT  +  T Q   +  TS P ++P
Sbjct: 125 NSLSSQPKHQEFHLFHTPTIPRTTQLSSK--TSSPIVIP 161


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 804 RYPISFYIIFILIDCCQLVSSHND 733
           ++ + FY  +++ D  Q+VS HND
Sbjct: 120 QFGVGFYSAYLVADKVQVVSKHND 143


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 322  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 185
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 85  ENLAISNGSIAFCFDIEIINSKNPSFNKSYFQXKMEQDVDNNFKIICSTCLCGDRKL--F 258
           E  +++N S  F   +  +N   P FN +  Q K   DV N   +  + C C    +  F
Sbjct: 448 EQTSVNNDSEEFETLLAKMNM-TPDFNDNLLQLKFTDDVRNVCPLNLNVCCCIAEPIQSF 506

Query: 259 ALNNTQEVYQIFR 297
            L+  +  Y++ +
Sbjct: 507 ILSFLRSTYKVLK 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,849
Number of Sequences: 5004
Number of extensions: 72956
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)