Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_K02
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator...    33   0.32 
At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator...    31   0.75 
At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein ...    31   1.3  
At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At2g31600.2 68415.m03861 expressed protein                             28   7.0  
At2g31600.1 68415.m03860 expressed protein                             28   7.0  
At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa...    28   9.2  

>At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 410

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 169 FY*NWGFLNLLFRYQNKKLYSHLKLPNFL 83
           F+  W FLN++F   NKK+Y++   P F+
Sbjct: 111 FFFMWYFLNVIFNILNKKIYNYFPYPYFV 139


>At5g46110.2 68418.m05670 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 297

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 157 WGFLNLLFRYQNKKLYSHLKLPNFL 83
           W FLN++F   NKK+Y++   P F+
Sbjct: 2   WYFLNVIFNILNKKIYNYFPYPYFV 26


>At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501
          Length = 562

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 611 LTSSEFVMEMYWVSSPPKVKSKNILS*SHFDETSSDDN 498
           L+++EF + +   SSPP    KNI + ++   +SS DN
Sbjct: 40  LSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSSGDN 77


>At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 805

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 316 RNRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F*SYCR 200
           RN    ++K D    CYS R  Y H  + Y + F + CR
Sbjct: 66  RNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCR 104


>At2g31600.2 68415.m03861 expressed protein
          Length = 216

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 781 NIKTDGIPHLTMSPLTTTQEDTIVVK 858
           N  T G+P  + SP+T +QED I+ +
Sbjct: 49  NPSTSGLPSTSNSPITMSQEDEILAR 74


>At2g31600.1 68415.m03860 expressed protein
          Length = 301

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 781 NIKTDGIPHLTMSPLTTTQEDTIVVK 858
           N  T G+P  + SP+T +QED I+ +
Sbjct: 49  NPSTSGLPSTSNSPITMSQEDEILAR 74


>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
           family protein contains Pfam profiles PF00702: haloacid
           dehalogenase-like hydrolase, PF02130: Uncharacterized
           protein family UPF0054
          Length = 584

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 619 HYDMVTAVRDNINLQIEDHILEV--PEFVLGGPVSDVMSHIVVGTDELTTVDEYENNIK 789
           ++   T  R N+ +Q +  +LE+  P    G  V  +++H+ V  DE+  + + EN+I+
Sbjct: 484 YWSEATGDRANV-VQAQSDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIE 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,004
Number of Sequences: 28952
Number of extensions: 370043
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)