Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J24
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    42   2e-04
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.032
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   2.1  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   4.8  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   8.4  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   8.4  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   8.4  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +1

Query: 154 YEEXKXDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEY 330
           ++E K  K  RYVVF + D K   V      + +++ FL DL +    +CRY ++DFE+
Sbjct: 16  FQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK---DCRYAIYDFEF 71



 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 368 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 463
           + K+  +SW PD A +K KM+YSSS D L+++
Sbjct: 78  RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +2

Query: 362 SKKQKLFLMSWCPDTAKVKKKMLYSSS 442
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 457 FQSVERARVQHLLLDLGGVRAPRHQEELLFLASLRRXPGT--GACIQSQTGHI 305
           +Q + RA + H +  +        Q E +F+  LRR PGT  G C       I
Sbjct: 113 YQVLTRACITHNIRHICTAHHANDQAETIFMRLLRRKPGTWGGLCAMKPVSQI 165


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +2

Query: 398 PDTAKVKKKMLY--SSSFDALKKSLVRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIY 571
           PD  K  K      SS+  ++  S + +  +H    P  SV       A   R P + I 
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253

Query: 572 TRARDETEPALRHS 613
            R    T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 460 LFQSVERAR-VQHLLLDLGGVRAPRHQEELLF 368
           LF   E AR V++LLL L G++A RH +  LF
Sbjct: 460 LFNLFEVAREVKNLLLLLEGLKAQRHNKPKLF 491


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 610 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPNKGLFQSVER 440
           + E  +G ++ SCV+  YW +  +     A     +R +  + +  P+K   Q +ER
Sbjct: 56  LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQ-IER 111


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 503 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 673
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 284 RAAPGNADMACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAK-VKKKMLYSSS-FDALK 457
           R A   AD      + +T  +     + K  +F +SW PD+++ V     YS   +DA  
Sbjct: 203 RFASAGADGKVYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIWDANT 262

Query: 458 KSLVR 472
            SL+R
Sbjct: 263 GSLIR 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,918
Number of Sequences: 5004
Number of extensions: 61107
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)