Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J24
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        38   0.011
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            31   0.96 
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             31   1.7  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               30   2.2  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         30   2.9  
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   29   6.8  
SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)                      28   9.0  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 356 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKK 460
           E + + KL L+ WCPD  ++K +M+ +++F  +KK
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKK 357


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 356 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKK 460
           E +++ KL L+ WCPD   +K KM+ +++F  + K
Sbjct: 76  EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMK 110


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 380 FLMSWCPDTAKVKKKMLYSSSFDALKK 460
           FL   C D A +KKKML  S+++ LKK
Sbjct: 256 FLFDRCSDEAPIKKKMLAGSTWEYLKK 282


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 377 LFLMSWCPDTAKVKKKMLYSSSFDALKK 460
           L  +SWC D A ++KKM  +S+ D ++K
Sbjct: 93  LVFISWCSDKAPIEKKMKLASTQDYVRK 120


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 378 SFCFLLASDVXLALV----RVFKVKQAISAFPGAALLQILEELFVFGVAFANRLDVDLFL 211
           S CFL  + V L L+    R F  +  +  FP A   + +    +  + F +R  VD+FL
Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500

Query: 210 V 208
           +
Sbjct: 501 I 501


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = +2

Query: 455 KKSLVRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 634
           ++ L+  +   P DRP        +   P  RS   S Y   RD    A +  C D  R 
Sbjct: 447 RQKLIHLARKTPRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRH 506

Query: 635 RH 640
           RH
Sbjct: 507 RH 508


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 570 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 698
           T EL+  T+ NPL  TPAL++RG   T R+   + + N+   IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 377 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVRSSEVHPSDR 499
           L  + WC D A +KK+M+ +++ + LK   V       +DR
Sbjct: 93  LVYIFWCSDNAPIKKRMVSAATNELLKTKFVVKKVFQINDR 133


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 329 YSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 237
           YS  +RPY HSPV  P+C S   R   YS +  P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 825 CHPYSY--NGCPAXQTETHYCFTAEIGRGRWYLPARTHKRSYH 703
           CHP     N C   +T+ + C   +  +  WY P++T    YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +3

Query: 570 THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGGRTSCESARVGTTA 746
           THE       L DT    T  HDTT     L   T N  +  D TG  T         T 
Sbjct: 515 THETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGNDTQLHDTTGNKTR 574

Query: 747 P 749
           P
Sbjct: 575 P 575


>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -2

Query: 466 KGLFQSVERARVQHLLLDLGGVRAPRHQEELLFLASLRRXPGTGACIQSQTGHICIPRCR 287
           +GL    E A VQHL +  G V+    +      A+ +  P    C+ +   H C P   
Sbjct: 136 EGLRVGHEHATVQHLEMAAGNVQGSLARPGT---ATYKNAPSLRLCVSASDSHRCGPGSN 192

Query: 286 PSAD 275
           P  D
Sbjct: 193 PGFD 196


>SB_36970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 443 FDALKKSLVRSSEVHPSDRPLGSVSGGRRREAPRH 547
           +  + + +V+ S++HP D P     G  RRE  RH
Sbjct: 23  YHGVPRLVVKGSKLHPKDLPTCLPMGPHRREFERH 57


>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
          Length = 390

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 717 CESARVGTTAPCLFLP*SSNAFRFEXRGSRCNYMGGTFML 836
           C+S    TT+ C++L    NA        RC  +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,853,110
Number of Sequences: 59808
Number of extensions: 522213
Number of successful extensions: 1494
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)