Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J24
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       51   1e-06
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    51   1e-06
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       44   2e-04
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    44   2e-04
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    44   2e-04
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    29   3.4  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    29   3.4  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   4.5  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = +1

Query: 154 YEEXKXDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK--GGTGECRYGLFDF 324
           Y+      +H Y++F I +++  I VE VGE+NA Y +F+E+++K      ECRY   D 
Sbjct: 15  YDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDV 74

Query: 325 EYTHQCQGHVG 357
           E T Q QG  G
Sbjct: 75  EVTVQRQGAEG 85



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 311 ACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           A + +      +     S   K+  + +CPD A V+++MLY+SS  ALK SL
Sbjct: 70  AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL 121


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = +1

Query: 154 YEEXKXDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK--GGTGECRYGLFDF 324
           Y+      +H Y++F I +++  I VE VGE+NA Y +F+E+++K      ECRY   D 
Sbjct: 15  YDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDV 74

Query: 325 EYTHQCQGHVG 357
           E T Q QG  G
Sbjct: 75  EVTVQRQGAEG 85



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 311 ACLTLNTRTSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           A + +      +     S   K+  + +CPD A V+++MLY+SS  ALK SL
Sbjct: 70  AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL 121


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +2

Query: 335 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL 133



 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 16/69 (23%)
 Frame = +1

Query: 175 KKHRYVVFYIRDEKQIDVETVGERN--------------AEYEQFLEDLQK--GGTGECR 306
           K++RY++F I DE ++ VE    ++              A +++F+ED++       +CR
Sbjct: 23  KEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCR 81

Query: 307 YGLFDFEYT 333
           Y +FDF++T
Sbjct: 82  YAVFDFKFT 90


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +2

Query: 335 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL 133



 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 16/69 (23%)
 Frame = +1

Query: 175 KKHRYVVFYIRDEKQIDVETVGERN--------------AEYEQFLEDLQK--GGTGECR 306
           K++RY++F I DE ++ VE    ++              A +++F+ED++       +CR
Sbjct: 23  KEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCR 81

Query: 307 YGLFDFEYT 333
           Y +FDF++T
Sbjct: 82  YAVFDFKFT 90


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +2

Query: 335 TSARXTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           T +R  +  SK  K+  +  CPD A +KKKM+Y+SS  A+K SL
Sbjct: 90  TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL 133



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +2

Query: 353 SEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 466
           SE S K+   L++ CPD A V+++MLY+SS  ALK SL
Sbjct: 147 SEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL 181



 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 16/69 (23%)
 Frame = +1

Query: 175 KKHRYVVFYIRDEKQIDVETVGERN--------------AEYEQFLEDLQK--GGTGECR 306
           K++RY++F I DE ++ VE    ++              A +++F+ED++       +CR
Sbjct: 23  KEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSSKAAFDKFVEDVKSRTDNLTDCR 81

Query: 307 YGLFDFEYT 333
           Y +FDF++T
Sbjct: 82  YAVFDFKFT 90


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 326 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 225
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 326 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 225
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 380  FLMSWCPDTAKVKKKMLYSSSFDALKKSLVRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 559
            FL S+C D A +   +  SSS  +   S+  S     +   LG +S G R  +    SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059

Query: 560  NSI 568
            NS+
Sbjct: 1060 NSV 1062


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 380  FLMSWCPDTAKVKKKMLYSSSFDALKKSLVRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 559
            FL S+C D A +   +  SSS  +   S+  S     +   LG +S G R  +    SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059

Query: 560  NSI 568
            NS+
Sbjct: 1060 NSV 1062


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 623 RQGRSVGERVRFRRELVCKCC 561
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,690,027
Number of Sequences: 27780
Number of extensions: 372106
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)