Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J23
         (1221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.57 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXP 683
           PPPPPP  F    +     PP   KK K   P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 557 PPPXKXIXXXSSPPPPXPXFXKKK 628
           PPP         PPPP P + KK+
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 557 PPPXKXIXXXSSPPPPXPXFXKKK 628
           PPP       S PPPP P    KK
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 567 PKXYXXXPPPPPP 605
           P  Y   PPPPPP
Sbjct: 184 PSDYNPPPPPPPP 196



 Score = 21.8 bits (44), Expect(2) = 1.7
 Identities = 9/35 (25%), Positives = 12/35 (34%)
 Frame = +3

Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
           PPPPPP    + +      P       +   P  P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIP 224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +3

Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPPXXXXXGGGG 719
           PPPPPP       +   G PP          PPPP        G
Sbjct: 311 PPPPPP-----PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 722 PPPPPPP 702
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 21.8 bits (44), Expect(2) = 4.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 719 PPPPPPXXXGGXG 681
           PPPPPP      G
Sbjct: 337 PPPPPPPRSNAAG 349


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 722 PPPPPPPXXXGGXG 681
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.507 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,056
Number of Sequences: 5004
Number of extensions: 31056
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)