Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J23
(1221 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.15
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 1.9
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 1.9
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 2.5
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 2.5
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 3.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 3.3
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 5.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 25 5.8
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 26 6.0
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 29 9.9
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 34.7 bits (76), Expect = 0.15
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP GGAPP PPPP
Sbjct: 945 PPPPGGNAPPPPPPPG-GSAPPPGGGAPPLPPPPGGSAPPPPP 986
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP GG+ P PPPP
Sbjct: 914 PPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPP 956
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP PP PPPP
Sbjct: 357 PPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPP 399
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP PP PPPP
Sbjct: 367 PPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPP 409
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +3
Query: 552 GGXXPPKXYXXXPP-PPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
GG PP PP PPPP PP PPPP
Sbjct: 342 GGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPP 389
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP G PP PPPP
Sbjct: 358 PPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP G PP PPPP
Sbjct: 368 PPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPP 410
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +3
Query: 552 GGXXPPKXYXXXPPPPPPXXFXKKKK----XXGGAPPXXKKKXKXXXPPPPXXXXXGGG 716
G PP PPPPPP ++ G + P PPPP GG
Sbjct: 203 GSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGG 261
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP PP + + PPPP
Sbjct: 271 PPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPP 313
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP PP + PPPP
Sbjct: 332 PPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPP 374
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +3
Query: 552 GGXXPPKXYXXXPPPPPPXXFXKKKK----XXGGAPPXXKKKXKXXXPPPPXXXXXGGG 716
G PP PPPPPP ++ G + P PPPP GG
Sbjct: 115 GSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGG 173
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP PP + + PPPP
Sbjct: 183 PPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPP 225
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPP PP + PPPP
Sbjct: 244 PPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPP 286
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPPXXXXXGG 713
PPPPPP + GGAPP PPP GG
Sbjct: 661 PPPPPPPPGGQA----GGAPPPPPPPLPGGAAPPPPPPIGGG 698
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPP G APP + PPPP
Sbjct: 288 PPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPP 330
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXG-GAPPXXK-----KKXKXXXPPPPXXXXXGG 713
PP PPPPPP ++ GAPP PPPP GG
Sbjct: 318 PPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGG 373
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Frame = +3
Query: 564 PPKXYXXXPPPP-----PPXXFXKKKKXXGGAPPXXKKKXKXXXPPPPXXXXXG 710
PP PPPP PP GGA P PPPP G
Sbjct: 330 PPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEG 383
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 591 PPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPP 689
PPPPP GAPP + PPP
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPP 319
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP + PP PPPP
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPP 415
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP PP PPPP
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP PP PPPP
Sbjct: 390 PPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +3
Query: 591 PPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPPXXXXXGG 713
PPPPP + PP + PPPP GG
Sbjct: 110 PPPPPRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGG 150
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +3
Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPPXXXXXGGG 716
P PPPP + PP PPPP GG
Sbjct: 108 PTPPPPPRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGG 150
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 564 PPKXYXXXPPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PP PPPPPP + PP + P PP
Sbjct: 207 PPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPP 249
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 24.6 bits (51), Expect(2) = 5.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 737 FFXXXPPPPPPP 702
F PPPPPPP
Sbjct: 1657 FHYPAPPPPPPP 1668
Score = 23.0 bits (47), Expect(2) = 5.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 722 PPPPPPPXXXGGXG 681
PPPPP P G G
Sbjct: 1664 PPPPPAPGPPGPDG 1677
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 25.8 bits (54), Expect(2) = 6.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 722 PPPPPPPXXXGGXG 681
PPPPPPP G G
Sbjct: 663 PPPPPPPPGGGVPG 676
Score = 21.8 bits (44), Expect(2) = 6.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 737 FFXXXPPPPP 708
FF PPPPP
Sbjct: 648 FFGGIPPPPP 657
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.7 bits (61), Expect = 9.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 588 PPPPPPXXFXKKKKXXGGAPPXXKKKXKXXXPPPP 692
PPPPPP F GGAPP PPPP
Sbjct: 198 PPPPPPPGF------PGGAPP--PPPPPFGAPPPP 224
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Frame = +3
Query: 588 PPPPPPXXFXKKKKXXGG----APPXXKKKXKXXXPPPPXXXXXGGG 716
PPPPPP GG APP PPPP GG
Sbjct: 280 PPPPPPLTGGMLPPPFGGHPAAAPPPPPLPAGVPAPPPPPPPPMLGG 326
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 552 GGXXPPKXYXXXPPPP--PPXXFXKKKKXXGGAPPXXKKKXKXXXPP 686
G PP+ + PPPP PP F + G PP +++ PP
Sbjct: 474 GMYPPPRGF---PPPPFGPPPPFYRGPPPPRGMPPPPRQRMPSQGPP 517
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.148 0.507
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,490,939
Number of Sequences: 59808
Number of extensions: 354471
Number of successful extensions: 2407
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3798822370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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