Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J22
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...   126   3e-30
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    27   4.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.8  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score =  126 bits (305), Expect = 3e-30
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L + E+GQ YAQVTKMLGNGR+EA CFDG+KRL HIRGKLRKKVWINQGDIIL+ LR++Q
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQ 85

Query: 390 DAKADVILKYTPXRS*ESKDVWRIP 464
           D K DVILKYT   +   K+   +P
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELP 110



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 430 EARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 531
           EAR LK  GE PET +INET  +  +G D+ D EF
Sbjct: 99  EARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 245 LGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLYGFYY---KHKQL 99
           + + +  +  + + FF F F  S   +FS F+F+F  + + F++   +HK L
Sbjct: 93  IAIFIHPYDSNVVPFFCFFFYFS---LFSFFSFLFTSLHFNFFFRLCRHKHL 141


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 172 GEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACVTSEGNYEK 336
           G E+  +  +  +W    ++ S   S  CS+ A W   +L+++  CV + G  ++
Sbjct: 220 GGEKWNVAAECDAWQANNSELS---SSICSISANWSTLSLLSTEGCVYAFGRCDR 271


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 302 FDAIKAHGLQAAITEHLCDLGVLLSVFLKDQLTFFSFIFVLSSPPIFSSFTFVFRHVLY 126
           FDA   H  +  +   LCD   L  V  +    F++ I+       FS   + F++ L+
Sbjct: 418 FDAALTHRDRECLIHDLCDNDQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLW 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,276
Number of Sequences: 5004
Number of extensions: 39468
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)