Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J22
         (852 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...   152   2e-38

>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score =  152 bits (368), Expect = 2e-38
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L+FKED QEYAQVTKMLGNGRLEAMCFDG+KRLCHIRGKLRKKVWINQGDIILIGLRDYQ
Sbjct: 26  LIFKEDEQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 85

Query: 390 DAKADVILKYTPXRS*ESKDVWRIP 464
           D+KADVILKYTP  +   K     P
Sbjct: 86  DSKADVILKYTPDEARNLKTYGEFP 110



 Score = 60.5 bits (140), Expect = 6e-11
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +1

Query: 430 EARNLKTYGEFPETVRINETVVYSVDGLDEDIEFG 534
           EARNLKTYGEFPE+VRINETV +  + +D+DIEFG
Sbjct: 99  EARNLKTYGEFPESVRINETVTFVENDMDDDIEFG 133


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,749
Number of Sequences: 2352
Number of extensions: 9452
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90545769
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)