Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J22
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   130   2e-30
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    29   4.2  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  130 bits (313), Expect = 2e-30
 Identities = 59/87 (67%), Positives = 69/87 (79%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L  KE+GQEY QV+KMLGNGR++  CFDG +R+CHIRGKLRKKVWIN GDIIL+GLRDYQ
Sbjct: 26  LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLRDYQ 85

Query: 390 DAKADVILKYTPXRS*ESKDVWRIPRD 470
           D K DVILKYTP  +   K+   IP +
Sbjct: 86  DDKGDVILKYTPDEARRLKNEGLIPEN 112


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 130 KTCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTP 243
           KT RKTK+++ KI      K ++ +  WS+ ++ K  P
Sbjct: 104 KTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,509
Number of Sequences: 27780
Number of extensions: 219852
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)