Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J22
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04520.1 68415.m00458 eukaryotic translation initiation facto...   129   2e-30
At5g35680.2 68418.m04264 eukaryotic translation initiation facto...   128   3e-30
At5g35680.1 68418.m04263 eukaryotic translation initiation facto...   128   3e-30
At2g40780.1 68415.m05031 hypothetical protein                          35   0.060
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    31   1.3  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    29   3.0  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    28   9.1  

>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/70 (81%), Positives = 62/70 (88%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L+FKEDGQEYAQV +MLGNGR EAMC DG KRLCHIRGK+ KKVWI  GDI+L+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85

Query: 390 DAKADVILKY 419
           D KADVILKY
Sbjct: 86  DDKADVILKY 95



 Score = 35.1 bits (77), Expect = 0.060
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 430 EARNLKTYGEFPETVRINETVVYSVDGLDED 522
           EAR LK YGE PE  R+NE +V  ++  D++
Sbjct: 99  EARLLKAYGELPENTRLNEGIVGDLEDDDDN 129


>At5g35680.2 68418.m04264 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  128 bits (310), Expect = 3e-30
 Identities = 56/70 (80%), Positives = 62/70 (88%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 390 DAKADVILKY 419
           D KADVILKY
Sbjct: 86  DDKADVILKY 95



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +1

Query: 430 EARNLKTYGEFPETVRINETVVYSVDGLDEDI 525
           EAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 99  EARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At5g35680.1 68418.m04263 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score =  128 bits (310), Expect = 3e-30
 Identities = 56/70 (80%), Positives = 62/70 (88%)
 Frame = +3

Query: 210 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 389
           L+FKEDGQEYAQV +MLGNGR + MC DG+KRLCHIRGK+ KKVWI  GDIIL+GLRDYQ
Sbjct: 26  LIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85

Query: 390 DAKADVILKY 419
           D KADVILKY
Sbjct: 86  DDKADVILKY 95



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +1

Query: 430 EARNLKTYGEFPETVRINETVVYSVDGLDEDI 525
           EAR LK YGE PE  R+NE +V  +D  D+D+
Sbjct: 99  EARLLKAYGELPENTRLNEGIVGDLDD-DDDV 129


>At2g40780.1 68415.m05031 hypothetical protein 
          Length = 171

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 222 EDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 371
           E+ Q  AQV  + G+ ++E M   G   L     K R+ +WI +G  ++I
Sbjct: 20  EECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMWIRRGSFVVI 69


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 243 QVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRD 383
           ++ K LGN ++  +  DG+ ++  +    ++K W   G  I+I  RD
Sbjct: 280 EIKKRLGNQKV-FLVLDGVDKVAQVHALAKEKNWFGPGSRIIITTRD 325


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 231 QEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 371
           ++++Q+ KML  GR+   C +      H+R  ++K  W  + DIILI
Sbjct: 210 KKWSQIAKML-QGRVGKQCRERWHN--HLRPDIKKDGWTEEEDIILI 253


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 218 KDQLTFFSFIFVLSSPPIFSSFTFVFRHVL 129
           KD   F +F+F++S+ P FS F    R +L
Sbjct: 562 KDSQVFNTFLFIVSAFPFFSRFLQCMRRML 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,290
Number of Sequences: 28952
Number of extensions: 203120
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)