Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J21
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 48 2e-06
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 48 2e-06
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 43 5e-05
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 2.2
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 26 6.6
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 8.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 8.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 8.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 8.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 8.7
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 26 8.7
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 48.0 bits (109), Expect = 2e-06
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRHHTLFVTD 568
H + ++ G+ YT+G QLG R + L P+ L KNII G +H+ + +
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVGAGSYHSFAIDN 296
Query: 569 TGCVYACGDNKSGQCGL 619
G VYA G N + QCG+
Sbjct: 297 KGRVYAWGLNITRQCGI 313
Score = 46.4 bits (105), Expect = 6e-06
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Frame = +2
Query: 371 VSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGD-----TVTR---------SVPELVP 502
V T G H++ + E+G +GR+ QLG D TV + S P ++P
Sbjct: 338 VKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIP 397
Query: 503 ELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 661
L N+I G HH L VT G VY+ G ++ + G G+ + PT ++
Sbjct: 398 GLT--NVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVR 448
Score = 44.8 bits (101), Expect = 2e-05
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNI 523
+I G + HS + +G Y +G N Q G G +T+ P LV L+G N+
Sbjct: 281 IISVGAGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITK--PTLVDALEGYNV 338
Query: 524 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGL-GNTTPQ 637
G HHTL + + G V A G + Q G+ N P+
Sbjct: 339 KSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPE 377
Score = 30.7 bits (66), Expect = 0.31
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +2
Query: 401 LVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGK--NIIHAAVGRHHTLFVTD 568
L +E Y FG + +LG G+ V P L P L ++ AVG H+ ++
Sbjct: 66 LPTERLNVYVFGSGSMNELGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSH 125
Query: 569 TGCVYACGDN 598
G VY G N
Sbjct: 126 DGRVYTWGVN 135
Score = 29.9 bits (64), Expect = 0.53
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRN---ACGQL------GFGDTVTRSVPELVPELKGKNIIHAAVGR 544
HS +S +G YT+G N A G+L GD V + E P + H V +
Sbjct: 119 HSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTK 178
Query: 545 -----HHTLFVTDTGCVYACGDNK--SGQCGLGNTTPQILKPTRIK 661
+ T +TD GC + G + G G ++ + +PT+++
Sbjct: 179 VICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMR 224
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 47.6 bits (108), Expect = 2e-06
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = +2
Query: 329 YTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG------DTVTRSVP 490
Y F +++I + HS+ +++ G Y++G+N G+LG D + P
Sbjct: 237 YNFIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITP 296
Query: 491 ELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNG 670
+ K II A G+ +++ TDT +Y+ G N +GQ G+ + + P R+
Sbjct: 297 RRISAFKDYQIIGMAAGKSYSVAWTDTD-IYSWGLN-NGQLGISDHISVVSTPRRVAGLL 354
Query: 671 TPIVKVGC 694
+P++ C
Sbjct: 355 SPVIHAVC 362
Score = 44.0 bits (99), Expect = 3e-05
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +2
Query: 392 HSVLVSEEGE--AYTFGRNACGQLGFGDTVTRS-VPELVPELKGKNIIHAAVGRHHTLFV 562
HSV++++E Y G A G++GF V + +P +P + K +I +V H+L +
Sbjct: 206 HSVVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIP--IPGIIHK-VIQISVSHTHSLAL 262
Query: 563 TDTGCVYACGDNKSGQCGLGN 625
T G +Y+ G N SG+ GL N
Sbjct: 263 TKFGSIYSWGKNGSGELGLSN 283
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 428 TFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSG 607
+ G N QLG + P++VP + I + G +HTL + + ++ACGDN+ G
Sbjct: 4 SLGSNGNFQLGLNNDEDVYSPQIVPF--DRAIEKISCGGNHTLLLDEDSQLWACGDNRKG 61
Query: 608 QCG 616
QCG
Sbjct: 62 QCG 64
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLV-SEEGEAYTFGRNACGQLGFGD-TVTRSVPEL-VPELKGKN-IIH 529
R + C SV+V ++ + G G+LG G+ + ++ + E+ +P L K II
Sbjct: 90 RWVFLTCGWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIID 149
Query: 530 AAVGRHHTLFVTDTGCVYACGDNKSGQCG 616
+ G H + VT+ G +Y CGD + GQ G
Sbjct: 150 ISAGLRHWICVTNEGNLYGCGDGRKGQLG 178
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFG------DTVTRSVPELVPELKGKNIIHAAVG 541
C H++L+ E+ + + G N GQ G+ + ++ + + + + G
Sbjct: 38 CGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWVFLTCG 97
Query: 542 RHHTLFV-TDTGCVYACGDNKSGQCGLGN-TTPQILKPTRIKY 664
++ V D V +CG+ SG+ G GN + Q L+ I Y
Sbjct: 98 WEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPY 140
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 167 VLTVQLVDWK*LNHYYPHLQRPEVS 93
++ +QL+DW N+Y HL++ EV+
Sbjct: 212 LIIIQLIDWWQSNNYESHLKKGEVA 236
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 367 YSQWVHCRTFSFGVRRGRSLHVW 435
Y W CR SF R+G+ W
Sbjct: 173 YVHWSECRQASFTYRKGKRFREW 195
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 78 FPRLLELGSGRLNLKDS 28
FP +L+LG G +NL+D+
Sbjct: 174 FPTILQLGQGLINLEDN 190
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 197 WYILQAPVLKVLTVQLVDWK*LNHYYPHL 111
W I + L V +++DWK L+ Y HL
Sbjct: 376 WLIERMMDLNVAEERMIDWKCLSEYANHL 404
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 497 LARERSVSPCLRSRVDHTHCDQTCRLLPLRTPKLNVLQCT 378
LA + S+S + +DH HCD ++ T ++ + + T
Sbjct: 1583 LADKDSLSAVKKLALDHAHCDYNFSVIASSTNEVTISELT 1622
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 553 IVCDRHWLCIRLRGQQERSVRTWEYNTSD 639
+ C + C + G ++++R W Y TS+
Sbjct: 316 VTCLQFDQCKLISGSMDKTIRIWNYRTSE 344
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 455 LGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
+ F D + R + ++PE KG AA G+ T+F+ T
Sbjct: 212 VAFNDDIRRPILAILPESKG----FAATGKRFTVFLIPT 246
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 176 PEPEECTTKLPEELLKTFYKTP 241
P E C + PE+L K+ Y TP
Sbjct: 46 PNVETCVSGFPEDLNKSMYITP 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,408
Number of Sequences: 5004
Number of extensions: 74161
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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