Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J21
(929 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.7
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 23 3.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 9.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 9.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 9.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 9.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 9.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 9.1
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 9.1
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 9.1
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.7
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 WSTRLRR-HGDTERSRASTRVEGQEHHPRRSWETPYIVCDRHWLCI 582
WS L R H ER+ + + W+ +V DR LC+
Sbjct: 390 WSRVLGRVHATIERNEKRLAEQDRRERMEFDWKQVALVSDRALLCV 435
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 23.4 bits (48), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 569 TGCVYACGDNKSGQCG 616
TG V AC ++ GQCG
Sbjct: 168 TGRVLACISSRPGQCG 183
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 385 SAPTDYKSVPTIGELMKCIKVRVGT 311
S PT +VP IG CI V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 385 SAPTDYKSVPTIGELMKCIKVRVGT 311
S PT +VP IG CI V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 385 SAPTDYKSVPTIGELMKCIKVRVGT 311
S PT +VP IG CI V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 385 SAPTDYKSVPTIGELMKCIKVRVGT 311
S PT +VP IG CI V +
Sbjct: 314 SMPTTSDAVPLIGSYFNCIMFMVAS 338
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 247 FDDSRSGVMGSYRQEGQQS 303
++DSR SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 9.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 428 TFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
T RN+ Q G G R + ELV +++ + +G
Sbjct: 297 TVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELG 334
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 9.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 428 TFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
T RN+ Q G G R + ELV +++ + +G
Sbjct: 297 TVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELG 334
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,722
Number of Sequences: 438
Number of extensions: 5317
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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