Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J21
(929 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 88 9e-18
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 78 7e-15
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 75 9e-14
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 75 9e-14
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 71 8e-13
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 68 1e-11
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 66 4e-11
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 65 5e-11
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 65 5e-11
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 65 7e-11
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 64 1e-10
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 64 2e-10
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 63 2e-10
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 63 2e-10
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 63 3e-10
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 61 9e-10
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 61 1e-09
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 60 2e-09
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 60 3e-09
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 57 2e-08
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 55 6e-08
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 52 5e-07
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 52 5e-07
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 52 7e-07
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 51 1e-06
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 50 3e-06
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 48 9e-06
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 48 9e-06
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 30 2.5
At3g19540.1 68416.m02477 expressed protein contains Pfam profile... 29 5.8
At1g40390.1 68414.m04790 hypothetical protein 28 7.7
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 87.8 bits (208), Expect = 9e-18
Identities = 46/128 (35%), Positives = 64/128 (50%)
Frame = +2
Query: 242 GVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGE 421
G L+ G +WD+ +R + + R + +GC + H V + EG
Sbjct: 20 GELLFCGATAWDIIGKR-KGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGR 78
Query: 422 AYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNK 601
YT+GRN GQLG GD + R P +V L I+ AA GR+HT+ V+D G G NK
Sbjct: 79 CYTWGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNK 138
Query: 602 SGQCGLGN 625
GQ GLG+
Sbjct: 139 YGQLGLGS 146
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII 526
++ C H+V V + G YT+G G+LG + P + + N++
Sbjct: 237 IVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRIDVFQRNNVL 290
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 78.2 bits (184), Expect = 7e-15
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H + ++ G+ +T+GR + GQLG GD + ++P+LV I AA G H+ F
Sbjct: 55 CGGAHVIALTSGGKVFTWGRGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWSHSGF 114
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGC 694
V+D+GC++ CG+ GQ G G+T + P ++ +N + V C
Sbjct: 115 VSDSGCIFTCGNGSFGQLGHGDTL-SLSTPAKVSHFNNDSVKMVAC 159
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 368 IVSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
+++ AG HS VS+ G +T G + GQLG GDT++ S P V ++ A G
Sbjct: 101 VITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLGHGDTLSLSTPAKVSHFNNDSVKMVACG 160
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLGN 625
H+L + V G K GQ G +
Sbjct: 161 MRHSLVLFAGNQVCGFGSGKRGQLGFSS 188
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQ---LGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 562
H++L++ +GE + G Q + ++ E VP+ G ++ A G H+ V
Sbjct: 261 HALLLTVDGEVFKLGSTLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAV 320
Query: 563 TDTGCVYACGDNKSGQCGLGNTTPQ 637
T+ G V G + GQ GLGNT Q
Sbjct: 321 TENGEVKTWGWGEHGQLGLGNTNDQ 345
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 386 AGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 499
A HS V+E GE T+G GQLG G+T ++ PELV
Sbjct: 314 AEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQTSPELV 351
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 410 EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYAC 589
EE + +++G GQLG +P+L+ +I A G H + +T G V+
Sbjct: 13 EEEQVWSWGAGTDGQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGKVFTW 72
Query: 590 GDNKSGQCGLGN 625
G SGQ G G+
Sbjct: 73 GRGSSGQLGHGD 84
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAAVGRHHT 553
C HS+++ + FG GQLGF +SV P +V LK ++ + H+
Sbjct: 159 CGMRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHS 218
Query: 554 LFVTDTGCVYACGDNKSGQCG 616
++ G ++ G G CG
Sbjct: 219 AAISADGQFFSWG---RGFCG 236
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
HS +S +G+ +++GR CG G V P+ +P + AVG +H L +T
Sbjct: 217 HSAAISADGQFFSWGRGFCG----GPDV--HAPQSLP--SPLSFREVAVGWNHALLLTVD 268
Query: 572 GCVYACGDNKSGQ 610
G V+ G + Q
Sbjct: 269 GEVFKLGSTLNKQ 281
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 74.5 bits (175), Expect = 9e-14
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +2
Query: 389 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 568
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 153 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 212
Query: 569 TGCVYACGDNKSGQCGLGN------TTPQIL 643
G VYACG G+ G TTPQ++
Sbjct: 213 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV 243
Score = 56.4 bits (130), Expect = 3e-08
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 305 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 484
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 343 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 400
Query: 485 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 643
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 401 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 460
Query: 644 KPT 652
PT
Sbjct: 461 SPT 463
Score = 54.8 bits (126), Expect = 8e-08
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 535
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 196 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 255
Query: 536 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGC-XCPXX 709
+G + T ++ G VY G+ G + +P P+V++ C
Sbjct: 256 IGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLL 315
Query: 710 XXXXXCNG-NLHSFGC 754
NG +++S GC
Sbjct: 316 ALACQPNGMSVYSVGC 331
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 530 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTR 655
A G H++ VT G VY G N SGQ G G+T + ++P R
Sbjct: 148 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR 190
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 74.5 bits (175), Expect = 9e-14
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +2
Query: 389 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 568
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 53 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 112
Query: 569 TGCVYACGDNKSGQCGLGN------TTPQIL 643
G VYACG G+ G TTPQ++
Sbjct: 113 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV 143
Score = 56.4 bits (130), Expect = 3e-08
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 305 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 484
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 243 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300
Query: 485 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 643
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 301 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 360
Query: 644 KPT 652
PT
Sbjct: 361 SPT 363
Score = 54.8 bits (126), Expect = 8e-08
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 535
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 96 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 155
Query: 536 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRIKYNGTPIVKVGC-XCPXX 709
+G + T ++ G VY G+ G + +P P+V++ C
Sbjct: 156 IGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLL 215
Query: 710 XXXXXCNG-NLHSFGC 754
NG +++S GC
Sbjct: 216 ALACQPNGMSVYSVGC 231
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 530 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTR 655
A G H++ VT G VY G N SGQ G G+T + ++P R
Sbjct: 48 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR 90
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 71.3 bits (167), Expect = 8e-13
Identities = 37/97 (38%), Positives = 52/97 (53%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H + V+ EGE ++GRN GQLG GDT VP+ + +G I A G HT
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 186
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNG 670
VT+ G +Y G + G GLG+ T +++ P R+ G
Sbjct: 187 VTEDGDLYGWGWGRYGNLGLGDRTDRLV-PERVTSTG 222
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
++ + C H++ VS G YT+G + GQLG GD +P + L I + G
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG 284
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY-NGTPIVKVGC 694
HT+ +T G +Y G NK GQ G+GN Q P ++++ + +V+V C
Sbjct: 285 WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ-CSPVQVRFPDDQKVVQVSC 335
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/100 (34%), Positives = 53/100 (53%)
Frame = +2
Query: 344 FTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNI 523
F R +++ +G A H+ V+E+G+ Y +G G LG GD R VPE V G+ +
Sbjct: 169 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 226
Query: 524 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQIL 643
A G HT+ V+ +G +Y G +K GQ G G+ ++
Sbjct: 227 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 266
Score = 58.0 bits (134), Expect = 8e-09
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Frame = +2
Query: 359 YRLIVSGCTAGHSVLVSEEG-EAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAA 535
++++ C A H+V S+ G E Y++G G+LG G++ P + L G I A
Sbjct: 67 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126
Query: 536 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGCXCPXXX 712
G H L VT G V + G N++GQ GLG+T ++ P +I+ + G I V
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAEHTA 185
Query: 713 XXXXCNGNLHSFG 751
+G+L+ +G
Sbjct: 186 AVTE-DGDLYGWG 197
Score = 53.6 bits (123), Expect = 2e-07
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
++++ A HSV + ++GR GQLG GD R P + L G I+ G
Sbjct: 16 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 75
Query: 542 RHHTLFVTDTGC-VYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGC 694
HT+ + +G VY+ G G+ G GN++ + P IK +G I ++ C
Sbjct: 76 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIAC 127
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/79 (30%), Positives = 44/79 (55%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
H++ ++ +G+ Y +G N GQ+G G+ + + P V + ++ + G HTL VT+
Sbjct: 287 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 346
Query: 572 GCVYACGDNKSGQCGLGNT 628
V+A G +GQ G+G +
Sbjct: 347 NNVFAWGRGTNGQLGIGES 365
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 341 KFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN 520
+F D + +++ C H++ V+E + +GR GQLG G++V R+ P+++ L
Sbjct: 323 RFPDDQ-KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS--- 378
Query: 521 IIHAAVGRH 547
+ A G+H
Sbjct: 379 -VDGASGQH 386
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 67.7 bits (158), Expect = 1e-11
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV--PELKGKNIIHAAVGRHHTLFVT 565
H++ +S +G+ Y FG N GQLG G +P L+ L+GK+ + G H+ +
Sbjct: 373 HTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLA 432
Query: 566 DTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
+ G + G NK GQ GLG+T + + PT+++ +G + KV C
Sbjct: 433 EDGQLLCWGWNKYGQLGLGDTNDRNI-PTQVQLDGCRLRKVAC 474
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C HS +++ G TFG GQ G G+T + P V E+K + A G HT+
Sbjct: 317 CGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVAAGLWHTIC 376
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQIL 643
++ G VYA G N+ GQ G G +IL
Sbjct: 377 ISSDGKVYAFGGNQFGQLGTGTDHAEIL 404
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C A HS +++E+G+ +G N GQLG GDT R++P V +L G + A G HTL
Sbjct: 423 CGARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQV-QLDGCRLRKVACGWWHTLL 481
Query: 560 VTDT 571
+ D+
Sbjct: 482 LGDS 485
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 512 GKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 658
G+ I + G H+ +TD G + G GQCG GNT Q L+P +
Sbjct: 309 GQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQ-LRPMAV 356
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 371 VSGCTAGHSVLVSEEGEAYTFGRNAC-GQLGFGDTVTRSVPELVPELKGKNIIHAAVGRH 547
V G G ++ +SE+G+ T+G GQ PE P ++ A+ G
Sbjct: 56 VCGGGCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFPLPTEAPVVQASSGWA 115
Query: 548 HTLFVTDTGCVYACG 592
H VT+TG + G
Sbjct: 116 HCAVVTETGEAFTWG 130
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H++ ++E + G N CGQLG D + ++ L K+I+H + G +H+
Sbjct: 89 CGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAA 148
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILK-PTRIK 661
+T G +Y G N SGQ GLG ++++ PT+++
Sbjct: 149 ITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVE 183
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 371 VSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGR 544
V+ AG HS E G A+ FG + ++GFG + P ++ E+ A G
Sbjct: 251 VTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAE--EVACGG 308
Query: 545 HHTLFVTDTGCVYACGDNKSGQCGLGNT 628
+HT VT G +Y G N++G G +T
Sbjct: 309 YHTCVVTRGGELYTWGSNENGCLGTDST 336
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 407 SEEGEAYT--FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCV 580
SE G+ + +G G+LG G+ ++ P + L +I A G HTLF+T+T V
Sbjct: 44 SESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLTETRRV 103
Query: 581 YACGDNKSGQCGLGNTTPQILKPTRI 658
+A G N GQ G+ + + P +
Sbjct: 104 FATGLNDCGQLGVSDVKSHAMDPLEV 129
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 434 GRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 568
G ++ GQLG G V + P +V K +H + G +HT V +
Sbjct: 388 GHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLE 432
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 256 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 314
Query: 572 GCVYACGDNKSGQCGLGNT 628
G V+ G NK GQ G G +
Sbjct: 315 GEVFTWGCNKEGQLGYGTS 333
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +2
Query: 332 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 505
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 287 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 346
Query: 506 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 592
LKGK A ++HTL + + G VY G
Sbjct: 347 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 375
Score = 55.2 bits (127), Expect = 6e-08
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 550
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 197 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 256
Query: 551 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCXCPXXXXXXXCN 730
T+ T+ G VY G N+ GQ G + Q P ++ IV V C
Sbjct: 257 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAVSAANKHTAVVSDC- 314
Query: 731 GNLHSFGC 754
G + ++GC
Sbjct: 315 GEVFTWGC 322
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 253 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 311
Query: 572 GCVYACGDNKSGQCGLGNT 628
G V+ G NK GQ G G +
Sbjct: 312 GEVFTWGCNKEGQLGYGTS 330
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +2
Query: 332 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 505
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 284 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 343
Query: 506 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 592
LKGK A ++HTL + + G VY G
Sbjct: 344 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 372
Score = 55.2 bits (127), Expect = 6e-08
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 550
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 194 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 253
Query: 551 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGCXCPXXXXXXXCN 730
T+ T+ G VY G N+ GQ G + Q P ++ IV V C
Sbjct: 254 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAVSAANKHTAVVSDC- 311
Query: 731 GNLHSFGC 754
G + ++GC
Sbjct: 312 GEVFTWGC 319
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 538
R +V G + +S+ + ++G+ +T+G N G LG +T T S P LV L I+ AA+
Sbjct: 41 RSVVGG--SRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAI 98
Query: 539 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTR 655
G H L V D G YA G N+ GQCG + + +P R
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVR 137
Score = 63.3 bits (147), Expect = 2e-10
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
RLI G A H++ + E+G + +G N GQLG GDT RS P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAG 256
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRIK-YNGTPIVKVGCXCPXXXX 715
H+ +T+ G VY G + G+ G G N + P ++ G I++V C
Sbjct: 257 GWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVA 316
Query: 716 XXXCNGNLHSFG 751
+G + SFG
Sbjct: 317 LTR-DGRIFSFG 327
Score = 48.8 bits (111), Expect = 5e-06
Identities = 33/92 (35%), Positives = 51/92 (55%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
R + +G T HSV+++ EG +T+G+ GD SVP V L+ +I AVG
Sbjct: 153 RQVAAGGT--HSVVLTREGYVWTWGQ----PWPPGDIKQISVPVRVQGLENVRLI--AVG 204
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQ 637
H L + + G ++A G+N+ GQ G G+T P+
Sbjct: 205 AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPR 236
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP 502
+I C HSV ++ +G ++FGR G+LG+G VT P +P
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELP 349
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 431 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 610
+G GQLG G + + +V L+ N+ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGT 69
Query: 611 CGLGNTTPQILKPTRIK 661
G T P+ +K
Sbjct: 70 LGHPPETKTESTPSLVK 86
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV--PELKGKNIIHAAVGRHHTLFVT 565
H+ S +G+ Y FG N GQLG G ++P+L+ P L+ N+ + G HT +T
Sbjct: 374 HTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVIT 433
Query: 566 DTGCVYACGDNKSGQCGLGN 625
D G V+ G NK GQ G+G+
Sbjct: 434 DEGRVFCWGWNKYGQLGIGD 453
Score = 58.0 bits (134), Expect = 8e-09
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C HS ++++ G TFG GQ G G T P V L G I A G HT
Sbjct: 318 CGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTC 377
Query: 560 VTDTGCVYACGDNKSGQCGLG----NTTPQILKPTRIKYNGTPIVKVG 691
+ G VYA G N+ GQ G G T P++L+ ++ + G
Sbjct: 378 ASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCG 425
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C A H+ ++++EG + +G N GQLG GD + R+ P V +K + A G HTL
Sbjct: 424 CGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNAPAEV-RIKDCFPKNIACGWWHTLL 482
Query: 560 V 562
+
Sbjct: 483 L 483
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 482 SVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKP 649
++P LV G I+ A G HTL ++D G V+ G GQ GLG+ + P
Sbjct: 223 ALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSP 278
Score = 36.3 bits (80), Expect = 0.029
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 26/121 (21%)
Frame = +2
Query: 368 IVSGCTAG-HSVLVSEEGEAYTFGRNACGQLGFGDTVT-----RSVPELVPELKGK---- 517
IVS G H++ +S+ G+ + +G GQLG G V +P + P GK
Sbjct: 236 IVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSS 295
Query: 518 -----NIIHA-----------AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKP 649
+++ A G H+ +TDTG + G GQCG G+T + L P
Sbjct: 296 GVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDE-LSP 354
Query: 650 T 652
T
Sbjct: 355 T 355
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 63.7 bits (148), Expect = 2e-10
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C ++VLV+++G+ Y++G + G+LG G P+L+ E G + A G HT
Sbjct: 303 CGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYVPHPKLIDEFNGSTVELADCGEFHTCA 362
Query: 560 VTDTGCVYAC--GDNKSGQCGLGNTTPQILKPTRI--KYNGTPIVKVGCXCPXXXXXXXC 727
VT +G +YA GD+ +G GLG+ KP RI + G + + C P
Sbjct: 363 VTASGDLYAWGDGDHNAGLLGLGSGASH-WKPVRILGQMEGIYVKAISCG-PWHTAFVTS 420
Query: 728 NGNLHSFG 751
G L +FG
Sbjct: 421 EGKLFTFG 428
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+ V+ EG+ +TFG G LG GD ++ ++P V L G I AA G H+
Sbjct: 410 CGPWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNIPREVEALNGCRTIKAACGVWHSAA 469
Query: 560 V-------TDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
V T +G ++ GD G+ G G+ +++ + + T +V C
Sbjct: 470 VVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTSFQQVAC 521
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
C H +++ + E YT+G+ + GQLG GDT R +P LV LKGK + G ++T
Sbjct: 568 CGFHHIAVLNSKAEVYTWGKGSNGQLGHGDTEYRCMPTLVKALKGKQVRKVVCGSNYT 625
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = +2
Query: 371 VSGCTAGHSVLVSEEGEAYTFGR--NACGQLGFGDTVTRSVP-ELVPELKGKNIIHAAVG 541
++ C H+ V+ G+ Y +G + G LG G + P ++ +++G + + G
Sbjct: 352 LADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCG 411
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
HT FVT G ++ GD G G G+ + NG +K C
Sbjct: 412 PWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNIPREVEALNGCRTIKAAC 462
Score = 34.3 bits (75), Expect = 0.12
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIH-AAVGRHHTL 556
C +V +S G+ Y A G + R+ P + GK+ + A G HH
Sbjct: 521 CGQSITVALSMSGQVY-----AMGTADPSHDIVRA-PSCIEGGLGKSFVQEVACGFHHIA 574
Query: 557 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGC 694
+ VY G +GQ G G+T + + PT +K G + KV C
Sbjct: 575 VLNSKAEVYTWGKGSNGQLGHGDTEYRCM-PTLVKALKGKQVRKVVC 620
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 63.3 bits (147), Expect = 2e-10
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +2
Query: 383 TAGHSVLVSEEGEAYTFGRNA---CGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
T HS V + G+ T G N+ CG L + R P+LV LKG A G H T
Sbjct: 171 TQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFR--PKLVEALKGTPCKQVAAGLHFT 228
Query: 554 LFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGT--PIVKVGCXCPXXXXXXXC 727
+F++ G Y CG N GQ G G+T + + P +++ T P+V++ P
Sbjct: 229 VFLSREGHAYTCGSNTHGQLGHGDTLDRPV-PKVVEFLKTIGPVVQIAAG-PSYVLAVTQ 286
Query: 728 NGNLHSFG 751
+G+++SFG
Sbjct: 287 DGSVYSFG 294
Score = 61.3 bits (142), Expect = 9e-10
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +2
Query: 395 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN-IIHAAVGRHHTLFVTDT 571
+V +S EG AYT G N GQLG GDT+ R VP++V LK ++ A G + L VT
Sbjct: 228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQD 287
Query: 572 GCVYACGDNKSGQCGLGNTTPQILKPTRI---KYNGTPIVKVGCXCPXXXXXXXCNGNLH 742
G VY+ G + G G + L+P I K G I++V NG ++
Sbjct: 288 GSVYSFGSGSNFCLGHGEQQDE-LQPRVIQAFKRKGIHILRVSAG-DEHAVALDSNGRVY 345
Query: 743 SFG 751
++G
Sbjct: 346 TWG 348
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 568
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 569 TGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKV 688
+G V CGDN S CG +T+ I +P ++ GTP +V
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQV 221
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 532
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 533 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 658
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 572 GCVYACGDNKSGQCGLGN--TTPQILKP 649
G +Y G G G + + ++L+P
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRP 421
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 63.3 bits (147), Expect = 2e-10
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +2
Query: 383 TAGHSVLVSEEGEAYTFGRNA---CGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
T HS V + G+ T G N+ CG L + R P+LV LKG A G H T
Sbjct: 171 TQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFR--PKLVEALKGTPCKQVAAGLHFT 228
Query: 554 LFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGT--PIVKVGCXCPXXXXXXXC 727
+F++ G Y CG N GQ G G+T + + P +++ T P+V++ P
Sbjct: 229 VFLSREGHAYTCGSNTHGQLGHGDTLDRPV-PKVVEFLKTIGPVVQIAAG-PSYVLAVTQ 286
Query: 728 NGNLHSFG 751
+G+++SFG
Sbjct: 287 DGSVYSFG 294
Score = 61.3 bits (142), Expect = 9e-10
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +2
Query: 395 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN-IIHAAVGRHHTLFVTDT 571
+V +S EG AYT G N GQLG GDT+ R VP++V LK ++ A G + L VT
Sbjct: 228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQD 287
Query: 572 GCVYACGDNKSGQCGLGNTTPQILKPTRI---KYNGTPIVKVGCXCPXXXXXXXCNGNLH 742
G VY+ G + G G + L+P I K G I++V NG ++
Sbjct: 288 GSVYSFGSGSNFCLGHGEQQDE-LQPRVIQAFKRKGIHILRVSAG-DEHAVALDSNGRVY 345
Query: 743 SFG 751
++G
Sbjct: 346 TWG 348
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 568
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 569 TGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKV 688
+G V CGDN S CG +T+ I +P ++ GTP +V
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQV 221
Score = 46.0 bits (104), Expect = 4e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 532
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 533 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 658
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 571
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 572 GCVYACGDNKSGQCGLGN--TTPQILKP 649
G +Y G G G + + ++L+P
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRP 421
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 62.9 bits (146), Expect = 3e-10
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+ LVS +GE +T+G + G+LG G + P+L+ L +I A G HT
Sbjct: 279 CGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCA 338
Query: 560 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCXCPXXXXXXXC 727
VT TG +Y GD + +G G G + P RI G I V C P
Sbjct: 339 VTMTGEIYTWGDGTHNAGLLGHGTDVSHWI-PKRISGPLEGLQIASVSCG-PWHTALITS 396
Query: 728 NGNLHSFG 751
G L +FG
Sbjct: 397 TGQLFTFG 404
Score = 49.2 bits (112), Expect = 4e-06
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 550
C H+ V+ GE YT+G G LG G V+ +P+ + L+G I + G H
Sbjct: 331 CGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGPWH 390
Query: 551 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGC 694
T +T TG ++ GD G G G+ + P ++ +G + V C
Sbjct: 391 TALITSTGQLFTFGDGTFGVLGHGD-KETVFYPREVESLSGLRTIAVAC 438
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
C A H +++ E +T+G+ A G+LG GD R P LV LK +++ + A G + T
Sbjct: 553 CGAYHVAVLTSRNEVFTWGKGANGRLGHGDVEDRKAPTLVDALKERHVKNIACGSNFT 610
Score = 37.5 bits (83), Expect = 0.013
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 389 GHSVLV--SEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII-HAAVGRHHTLF 559
GHS+ V + G+ YT G GQLG +P LV + K+ + A G +H
Sbjct: 502 GHSLTVGLTTSGKVYTMGSTVYGQLG-NPNADGKLPCLVEDKLTKDCVEEIACGAYHVAV 560
Query: 560 VTDTGCVYACGDNKSGQCGLGN 625
+T V+ G +G+ G G+
Sbjct: 561 LTSRNEVFTWGKGANGRLGHGD 582
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 61.3 bits (142), Expect = 9e-10
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 538
R +VSG + +S+ + ++G +T+G N G LG +T T ++P V L I AA+
Sbjct: 41 RSVVSG--SRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAI 98
Query: 539 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTR 655
G H L V D G YA G N+ GQCG ++ +P R
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVR 137
Score = 60.5 bits (140), Expect = 2e-09
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
RLI G A H++ + E+G +G N GQLG GDT S P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAG 256
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRIKYNG-TPIVKVGCXCPXXXX 715
H+ +TD G VY G + G+ GLG N + P ++ I++V C
Sbjct: 257 GWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVA 316
Query: 716 XXXCNGNLHSFG 751
+G + SFG
Sbjct: 317 LTR-DGRIFSFG 327
Score = 47.2 bits (107), Expect = 2e-05
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
R + +G T HSV+++ EG +T+G+ GD SVP V L+ +I AVG
Sbjct: 153 RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLENVRLI--AVG 204
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTP 634
H L + + G + A G+N+ GQ G G+T P
Sbjct: 205 AFHNLALEEDGRLLAWGNNEYGQLGTGDTQP 235
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 365 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP 502
+I C HSV ++ +G ++FGR G+LG+G VT P +P
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELP 349
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 431 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 610
+G GQLG G + +V L+ ++ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRGT 69
Query: 611 CGLGNTTPQILKPTRIK 661
G T P+R+K
Sbjct: 70 LGHQPETKTENIPSRVK 86
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 60.9 bits (141), Expect = 1e-09
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G +H+
Sbjct: 338 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCA 397
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY--NGTPIVKVGCXCPXXXXXXXCNG 733
VT +G +Y G G G GN + P R+ + G + + C P G
Sbjct: 398 VTLSGDLYTWGKGDFGILGHGNEVSHWV-PKRVNFLMEGIHVSSIACG-PYHTAVVTSAG 455
Query: 734 NLHSFG 751
L +FG
Sbjct: 456 QLFTFG 461
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-KGKNIIHAAVGRHHTL 556
C HS V+ G+ YT+G+ G LG G+ V+ VP+ V L +G ++ A G +HT
Sbjct: 390 CGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTA 449
Query: 557 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
VT G ++ GD G G G+ + G V+ C
Sbjct: 450 VVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAAC 495
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/81 (33%), Positives = 37/81 (45%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+ +V+ G+ +TFG G LG GD + +P V LKG + AA G HT
Sbjct: 443 CGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAA 502
Query: 560 VTDTGCVYACGDNKSGQCGLG 622
V + G + S C G
Sbjct: 503 VVEV----MVGSSSSSNCSSG 519
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C A H +++ E YT+G+ + G+LG GD R+ P LV LK K + A G + T
Sbjct: 611 CGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAA 670
Query: 560 V 562
V
Sbjct: 671 V 671
Score = 35.5 bits (78), Expect = 0.051
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +2
Query: 389 GHSVLVS--EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII-HAAVGRHHTLF 559
GHS+ V+ G YT G GQLG VP V K+ + A G +H
Sbjct: 560 GHSLTVALTTSGHVYTMGSPVYGQLG-NPHADGKVPTRVDGKLHKSFVEEIACGAYHVAV 618
Query: 560 VTDTGCVYACGDNKSGQCGLGN 625
+T VY G +G+ G G+
Sbjct: 619 LTSRTEVYTWGKGSNGRLGHGD 640
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 60.5 bits (140), Expect = 2e-09
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G H+
Sbjct: 302 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCA 361
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY--NGTPIVKVGCXCPXXXXXXXCNG 733
VT +G +Y G G G GN + P R+ + G + + C P G
Sbjct: 362 VTLSGDLYTWGKGDFGVLGHGNEVSHWV-PKRVNFLLEGIHVSSIACG-PYHTAVVTSAG 419
Query: 734 NLHSFG 751
L +FG
Sbjct: 420 QLFTFG 425
Score = 54.4 bits (125), Expect = 1e-07
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-KGKNIIHAAVGRHHTL 556
C HS V+ G+ YT+G+ G LG G+ V+ VP+ V L +G ++ A G +HT
Sbjct: 354 CGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTA 413
Query: 557 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
VT G ++ GD G G G+ + G V+ C
Sbjct: 414 VVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAAC 459
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+ +V+ G+ +TFG G LG GD + +P V LKG + AA G HT
Sbjct: 407 CGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAA 466
Query: 560 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPT 652
V + +G ++ GD G+ G GN P+++ PT
Sbjct: 467 VVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLV-PT 508
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C A H +++ E YT+G+ + G+LG GD R+ P LV LK K + A G + T
Sbjct: 575 CGAYHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAA 634
Query: 560 V 562
V
Sbjct: 635 V 635
Score = 36.3 bits (80), Expect = 0.029
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +2
Query: 389 GHSVLVS--EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 562
GHS+ V+ G YT G GQLG ++ + +L + A G +H +
Sbjct: 524 GHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGAYHVAVL 583
Query: 563 TDTGCVYACGDNKSGQCGLGN 625
T VY G +G+ G G+
Sbjct: 584 TSRTEVYTWGKGSNGRLGHGD 604
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 59.7 bits (138), Expect = 3e-09
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H LV+ +GE +T+G G+LG G V S P+LV L NI A G +HT
Sbjct: 258 CGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDISRPKLVEFLALTNIDFVACGEYHTCV 317
Query: 560 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCXCPXXXXXXXC 727
V+ +G +++ GD + G G G+ + P R+ G ++ V C
Sbjct: 318 VSTSGDLFSWGDGIHNVGLLGHGSDISHWI-PKRVSGPLEGLQVLSVACG-TWHSALATA 375
Query: 728 NGNLHSFG 751
NG L +FG
Sbjct: 376 NGKLFTFG 383
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
C A H +++ E +T+G+ A G+LG GDT + P LV L+ +++ + G + T
Sbjct: 531 CGAHHVAVLTSRSEVFTWGKGANGRLGHGDTEDKRTPTLVEALRDRHVKSLSCGSNFT 588
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C HS L + G+ +TFG A G LG G+ + S P+ V L G + A HT
Sbjct: 365 CGTWHSALATANGKLFTFGDGAFGVLGHGNRESVSYPKEVQSLNGLKTVKVACSIWHTAA 424
Query: 560 VTD 568
+ +
Sbjct: 425 IVE 427
Score = 42.3 bits (95), Expect = 4e-04
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Frame = +2
Query: 224 TFYKTPGVLMIAGLVSWDLTARR-----DNNPTKRTHPNLYTF------HKFTDRRYRLI 370
+ + T ++ + G + +++R+ D + + H N T+ D + I
Sbjct: 418 SIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFHKI 477
Query: 371 VSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRH 547
G T +V ++ G +T G A GQLG +P LV + L G+ + A G H
Sbjct: 478 ACGHT--FTVALTTSGHVFTMGGTAHGQLG-NSISDGKLPCLVQDRLVGEFVEEIACGAH 534
Query: 548 HTLFVTDTGCVYACGDNKSGQCGLGNT----TPQILKPTRIKY 664
H +T V+ G +G+ G G+T TP +++ R ++
Sbjct: 535 HVAVLTSRSEVFTWGKGANGRLGHGDTEDKRTPTLVEALRDRH 577
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/92 (36%), Positives = 46/92 (50%)
Frame = +2
Query: 386 AGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVT 565
A + + S G+ +T+G GQLG GD T+ +PE V L +NI A G T+ T
Sbjct: 468 ASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVISLTNENICQVACGHSLTVSRT 527
Query: 566 DTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 661
G VY G GQ LGN T + P R++
Sbjct: 528 SRGHVYTMGSTAYGQ--LGNPTAKGNFPERVE 557
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+ +V+ G+ +TFG G LG GD + SVP V L G + A G HT
Sbjct: 401 CGPWHTAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVTKVACGVWHTAA 460
Query: 560 VTDT-------------GCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
V + G V+ GD + GQ G G+ ++L I I +V C
Sbjct: 461 VVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVISLTNENICQVAC 518
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H+VLV+++GE +++G G+LG G P+ + ++G A G HT
Sbjct: 294 CGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQKPKFISSVRGLGFKSLACGDFHTCA 353
Query: 560 VTDTGCVYACGD--NKSGQCGLGN-TTPQILKPTRIKYNGTPIVKVGCXCPXXXXXXXCN 730
+T +G +Y+ GD + G GN ++ I K G + V C P +
Sbjct: 354 ITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACG-PWHTAVVASS 412
Query: 731 GNLHSFG 751
G L +FG
Sbjct: 413 GQLFTFG 419
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 389 GHSVLVSE--EGEAYTFGRNACGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHHTLF 559
GHS+ VS G YT G A GQLG T + PE V ++ ++ A G +H
Sbjct: 519 GHSLTVSRTSRGHVYTMGSTAYGQLG-NPTAKGNFPERVEGDIVEASVEEIACGSYHVAV 577
Query: 560 VTDTGCVYACGDNKSGQCGLGN 625
+T +Y G +GQ G GN
Sbjct: 578 LTSKSEIYTWGKGLNGQLGHGN 599
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 550
C H+ +++ G+ Y++G LG G+ + +P+ V +L+G + A G H
Sbjct: 346 CGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWH 405
Query: 551 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKYNGTPIVKVGC 694
T V +G ++ GD G G G+ + G + KV C
Sbjct: 406 TAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVTKVAC 453
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C + H +++ + E YT+G+ GQLG G+ + P +V L+ K + G + T
Sbjct: 570 CGSYHVAVLTSKSEIYTWGKGLNGQLGHGNVENKREPAVVGFLREKQVKAITCGSNFTAV 629
Query: 560 V 562
+
Sbjct: 630 I 630
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 55.2 bits (127), Expect = 6e-08
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C H LV+ +GE +T+ A G+LG G V P+LV L NI A G +HT
Sbjct: 1209 CGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCA 1268
Query: 560 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIK--YNGTPIVKVGCXCPXXXXXXXC 727
V+ +G ++ GD + G G G+ + P R+ G ++ V C
Sbjct: 1269 VSTSGDLFTWGDGIHNVGLLGHGSDLSHWI-PKRVSGPVEGLQVLSVACG-TWHSALATA 1326
Query: 728 NGNLHSFG 751
NG L +FG
Sbjct: 1327 NGKLFTFG 1334
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C HS L + G+ +TFG A G LG GD + S P+ V L G + A G HT+
Sbjct: 1316 CGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVA 1375
Query: 560 VTD----TGC------VYACGDNKSGQCGLGNTTPQILKPT 652
+ + TG ++ GD + G GN +L PT
Sbjct: 1376 IVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLL-PT 1415
Score = 38.3 bits (85), Expect = 0.007
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Frame = +2
Query: 263 LVSW-DLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGR 439
L +W D R + K T+ D + I G T +V ++ G +T G
Sbjct: 1392 LFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHT--FTVALTTSGHVFTMGG 1449
Query: 440 NACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 616
+ GQLG ++ +P LV + L G+ + + G HH +T V+ G +G+ G
Sbjct: 1450 TSHGQLGSSNS-DGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLG 1508
Query: 617 LGN----TTPQILKPTRIKY 664
G+ TP +++ R ++
Sbjct: 1509 HGDKDDRKTPTLVEALRERH 1528
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/94 (31%), Positives = 50/94 (53%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C ++ +++EG+ + +G N+ +LG GD + P VP L+G I A G +H+L
Sbjct: 200 CGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLA 259
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 661
+T+ G V + G GQ G + Q + PT I+
Sbjct: 260 LTEEGKVLSWGHGGHGQLGSSSLRNQKV-PTEIE 292
Score = 46.0 bits (104), Expect = 4e-05
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Frame = +2
Query: 320 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 499
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 74 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 129
Query: 500 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIK 661
+ I A HT +T++G +Y G + G+ GLG N + P+++K
Sbjct: 130 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 189
Query: 662 YNGTPIVKVGC 694
P+ V C
Sbjct: 190 ALTVPVASVSC 200
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
R+ C HS+ ++EEG+ ++G GQLG + VP + L K I+ A G
Sbjct: 246 RITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASG 305
Query: 542 RHHTL-------FVTDTGCVYACGDNKSGQCGL 619
+ F+TD G ++ G+ K Q G+
Sbjct: 306 GSSSAAITGWDWFLTDGGELWMWGNAKDFQLGV 338
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/94 (31%), Positives = 50/94 (53%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C ++ +++EG+ + +G N+ +LG GD + P VP L+G I A G +H+L
Sbjct: 269 CGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLA 328
Query: 560 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 661
+T+ G V + G GQ G + Q + PT I+
Sbjct: 329 LTEEGKVLSWGHGGHGQLGSSSLRNQKV-PTEIE 361
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 541
R+ C HS+ ++EEG+ ++G GQLG + VP + L K I+ A G
Sbjct: 315 RITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASG 374
Query: 542 RHHTLFVTDTGCVYACGDNKSGQCGL 619
+ +TD G ++ G+ K Q G+
Sbjct: 375 GSSSAAITDGGELWMWGNAKDFQLGV 400
Score = 46.0 bits (104), Expect = 4e-05
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Frame = +2
Query: 320 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 499
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 143 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 198
Query: 500 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIK 661
+ I A HT +T++G +Y G + G+ GLG N + P+++K
Sbjct: 199 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 258
Query: 662 YNGTPIVKVGC 694
P+ V C
Sbjct: 259 ALTVPVASVSC 269
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 362 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS---VPELVPELKGKNIIHA 532
+++ C H+ +S+ GE YT+G + GQLG + +P V L G ++
Sbjct: 228 KIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEV 287
Query: 533 AVGRHHTLFVTDTGCVYACGDNKSGQCGLG 622
A G HT ++ G +YA G ++GQ GLG
Sbjct: 288 ACGGVHTCALSLEGALYAWGGGQAGQLGLG 317
Score = 41.5 bits (93), Expect = 8e-04
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVT-RSVPELV----------PELKGKNII 526
C H V +SEEG +G N GQLG G T P ++ PEL I+
Sbjct: 173 CGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPEL--VKIM 230
Query: 527 HAAVGRHHTLFVTDTGCVYACGDNKSGQCG---LGNTTPQILKPTRIKYNGTPIVKVGC 694
+ G +HT ++D G VY G GQ G L + +++ + +G + +V C
Sbjct: 231 QLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVAC 289
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 51.2 bits (117), Expect = 1e-06
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Frame = +2
Query: 371 VSGCTAGH--SVLVSEEGEAYTFGRNACGQLGF----GDTVTRSVPELVPELKGKNIIHA 532
+S +AGH S+ V+ GE + +GRN GQLG +RS P+ V L+ N+ A
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAA 143
Query: 533 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK 661
+ + D G ++ G +K GQ GLGN + P+R++
Sbjct: 144 FASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVE 186
Score = 45.2 bits (102), Expect = 6e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 389 GHSVLVSEEGEA--YTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 562
GHS+ + GE ++G N QLG G ++P V G++ + GR H+L V
Sbjct: 344 GHSLAICNRGERNILSWGWNRSRQLGRGKP--ENLPREVEGFDGESPASVSAGRVHSLCV 401
Query: 563 TDTGCVYACGDNKSGQCGLGNTTPQ 637
T+ G + G K+G+ GLG+++ +
Sbjct: 402 TEKGEAWVWGCGKNGRLGLGSSSDE 426
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 562
HS+ V+E+GEA+ +G G+LG G + P L+ +++G ++ A G H+L +
Sbjct: 397 HSLCVTEKGEAWVWGCGKNGRLGLGSSSDEPEPMLLEDVEG-CVLQAVAGFDHSLIL 452
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 559
C + HS+++ +G + G N GQLG P + E + I A G H+L
Sbjct: 293 CGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPVDITE----SPISIAAGLGHSLA 348
Query: 560 VTDTG--CVYACGDNKSGQCGLG 622
+ + G + + G N+S Q G G
Sbjct: 349 ICNRGERNILSWGWNRSRQLGRG 371
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
C A H ++ E YT+G+ A G+LG GD R VP +V LK +++ + A G ++T
Sbjct: 564 CGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEALKDRHVKYIACGSNYT 621
Score = 48.4 bits (110), Expect = 7e-06
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKG-KNIIHAAVGRHHTL 556
C H+ V+ +GE +T+G + G+LG G P LV L ++ A G HT
Sbjct: 288 CGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTC 347
Query: 557 FVTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRI--KYNGTPIVKVGCXCPXXXXXXX 724
VT G +Y GD + G G G+ + P RI G + V C P
Sbjct: 348 AVTLAGELYTWGDGTHNVGLLGHGSDISHWI-PKRIAGSLEGLHVASVSCG-PWHTALIT 405
Query: 725 CNGNLHSFG 751
G L +FG
Sbjct: 406 SYGRLFTFG 414
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 550
C H+ V+ GE YT+G G LG G ++ +P+ + L+G ++ + G H
Sbjct: 341 CGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWH 400
Query: 551 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIK-YNGTPIVKVGC 694
T +T G ++ GD G G G+ + P ++ +G + V C
Sbjct: 401 TALITSYGRLFTFGDGTFGVLGHGD-KETVQYPREVESLSGLRTIAVSC 448
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 350 DRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP---ELKGK- 517
D ++I H++ ++ +G Y++GR G+LG G VP LV + +G
Sbjct: 13 DLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDR 72
Query: 518 -NIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 616
I+ A G +H+L V+D G V+ G N GQ G
Sbjct: 73 IRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG 106
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 494 LVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIKY 664
L+ E + II A G HT+ +T GCVY+ G G+ G G + +++ P +++
Sbjct: 9 LISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELV-PVLVEF 64
Score = 37.9 bits (84), Expect = 0.009
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 356 RYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-------KG 514
R R++ A HS+ VS++G + +G N GQLGF D P L+ L
Sbjct: 72 RIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGF-DGENSLAPCLIKNLFERETSSSS 130
Query: 515 KNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLGNTTPQILKP-TRIKYNGTPI 679
N VG + G + + DN G GN PQ +P R+ + PI
Sbjct: 131 LNDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPI 187
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 425 YTFGRNACGQLGFGDTVTRSVPELVP---ELKGKNIIHAAVGRHHTLFVT 565
Y++G N GQLG GD +R+ P+ V + G + A G HHT +T
Sbjct: 230 YSWGNNHHGQLGLGDGESRARPQTVETFNQKSGLTVYDIACGAHHTALLT 279
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Frame = +2
Query: 380 CTAGHSVLVSEEGEA-------YTFGRNACGQLGFGDTVTRSVPELVPEL-KGKNIIHAA 535
C A H+ L++ E +TFG GQLG + S+PE V +L + ++
Sbjct: 270 CGAHHTALLTYRKETPKGPSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPEHAYLVSVD 329
Query: 536 VGRHHTLFVTDTGCVYACGDNKS-GQC 613
G HT V+ G V++ G + G C
Sbjct: 330 CGLFHTSVVSSEGYVWSWGMERGLGLC 356
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 395 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTG 574
+V +S G YT G + GQLG +SV ++ L + + A G HH +T G
Sbjct: 523 TVALSISGTVYTMGSSIHGQLGCPRAKDKSVNVVLGNLTRQFVKDIASGSHHVAVLTSFG 582
Query: 575 CVYACGDNKSGQCGLGN 625
VY G +GQ GLG+
Sbjct: 583 NVYTWGKGMNGQLGLGD 599
Score = 36.7 bits (81), Expect = 0.022
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 392 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 553
H +++ G YT+G+ GQLG GD R+ P LV L + + A G + T
Sbjct: 574 HVAVLTSFGNVYTWGKGMNGQLGLGDVRDRNSPVLVEPLGDRLVESIACGLNLT 627
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 188 ECTTKLPEELLKTFYKTPGVL 250
+C TKL E LLK+FYKT ++
Sbjct: 242 DCDTKLDEYLLKSFYKTASLV 262
>At3g19540.1 68416.m02477 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 485
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 93 RNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPL 200
RN L + ++ L PIH +S L H S+KN P+
Sbjct: 127 RNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPI 162
>At1g40390.1 68414.m04790 hypothetical protein
Length = 426
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 498 TSSGTLRVTVSPKPS*PHALRPNV*ASPSSDTKTECPAVHPLTISRYRRS 349
T T +S S P + R N + D + ECP +H LTI+R S
Sbjct: 356 TPRSTRSFKISRDHSTPRSSRRNHHFTSPLDHEVECPHLHHLTITRSNHS 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,657
Number of Sequences: 28952
Number of extensions: 411039
Number of successful extensions: 1354
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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