Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J20
         (852 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s...    38   0.32 
UniRef50_Q6EQP9 Cluster: Putative uncharacterized protein OSJNBa...    35   3.0  

>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 307

 Score = 37.9 bits (84), Expect = 0.32
 Identities = 25/78 (32%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
 Frame = +1

Query: 487 PXKKXXPXFXXPPPXKXPPXXLGPXXFFFXPXIFPXXXXGP---PQXXPXGF---FFFPX 648
           P     P F  PPP   PP    P  FF  P  FP     P   P   P  F   F FP 
Sbjct: 192 PPPPPPPPFSPPPPPSPPPSLFSPPPFFSPPPSFPPLPPPPYFSPLPLPPFFLLPFLFPP 251

Query: 649 XXXXFFXXKXPPKKXXXG 702
               F     PP     G
Sbjct: 252 PPFFFPPKPNPPPPPPPG 269



 Score = 33.1 bits (72), Expect = 9.1
 Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
 Frame = +3

Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXGXFF---FPPXXXX 659
           P    PP   PPP    P    PP   F P  F       PP  P   F     PP    
Sbjct: 186 PLFPPPPPPPPPPPFSPPPPPSPPPSLFSPPPFFSPPPSFPPLPPPPYFSPLPLPPFFLL 245

Query: 660 FFFXKXPP 683
            F    PP
Sbjct: 246 PFLFPPPP 253


>UniRef50_Q6EQP9 Cluster: Putative uncharacterized protein
           OSJNBa0004P20.21; n=4; Oryza sativa|Rep: Putative
           uncharacterized protein OSJNBa0004P20.21 - Oryza sativa
           subsp. japonica (Rice)
          Length = 397

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 24/64 (37%), Positives = 25/64 (39%)
 Frame = +3

Query: 519 PPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFFFXKXPPXKXXX 698
           PPPF   P    PP   F P   S    G PP  P G FF PP        + PP     
Sbjct: 38  PPPFGFPPPP--PPGSTFVPLPQS----GVPPPPPLGSFFVPPPQ-----SRVPPPPPQL 86

Query: 699 GGPP 710
           G PP
Sbjct: 87  GVPP 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,455,933
Number of Sequences: 1657284
Number of extensions: 9460662
Number of successful extensions: 16584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15890
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)