Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J20
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0603 - 11150739-11150746,11150791-11151340                       35   0.095
06_03_0905 + 25843547-25844314                                         29   6.2  
06_01_0576 - 4073261-4073821,4073891-4074145                           28   8.2  

>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 24/64 (37%), Positives = 25/64 (39%)
 Frame = +3

Query: 519 PPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFFFXKXPPXKXXX 698
           PPPF   P    PP   F P   S    G PP  P G FF PP        + PP     
Sbjct: 38  PPPFGFPPPP--PPGSTFVPLPQS----GVPPPPPLGSFFVPPPQ-----SRVPPPPPQL 86

Query: 699 GGPP 710
           G PP
Sbjct: 87  GVPP 90


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = +1

Query: 481 RXPXKKXXPXFXXPPPXKXPPXXLGPXXFFFXPXI-FPXXXXGPPQXXPXGFFFFPXXXX 657
           + P  +  P     PP   PP  +GP   +  P +  P    GPP   P     +P    
Sbjct: 92  KGPVTRPPPVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTPPV 151

Query: 658 XFFXXKXPPKKXXXGXPP 711
            +     PP       PP
Sbjct: 152 TY---PTPPTTTPCPPPP 166


>06_01_0576 - 4073261-4073821,4073891-4074145
          Length = 271

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 404 FXXFVXGGGXXXGGPKNLGPKIL*XXGGPXKKXPPXF 514
           F     GGG   GG KN+ P+ L     P    PP F
Sbjct: 231 FRSLSVGGGGGGGGGKNVTPRPLSTSPSPTPPAPPAF 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,248
Number of Sequences: 37544
Number of extensions: 326227
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)