Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J20
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 3.0
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 3.0
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 32 3.0
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 32 3.0
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 3.0
D25218-1|BAA04948.1| 399|Homo sapiens KIAA0112 protein. 31 7.0
BC013043-1|AAH13043.1| 365|Homo sapiens RRS1 ribosome biogenesi... 31 7.0
BC001811-1|AAH01811.1| 365|Homo sapiens RRS1 ribosome biogenesi... 31 7.0
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.0
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXP-XGXFFFPPXXXXFF 665
P + PP P P P GPP P + G PP P FFPP
Sbjct: 312 PQQGPPPPPGPFP-PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 370
Query: 666 ---FXKXPPXKXXXGGPP 710
+ PP G PP
Sbjct: 371 PTSDSRGPPPTDPYGRPP 388
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.0
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXP-XGXFFFPPXXXXFF 665
P + PP P P P GPP P + G PP P FFPP
Sbjct: 312 PQQGPPPPPGPFP-PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 370
Query: 666 ---FXKXPPXKXXXGGPP 710
+ PP G PP
Sbjct: 371 PTSDSRGPPPTDPYGRPP 388
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.9 bits (69), Expect = 3.0
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXP-XGXFFFPPXXXXFF 665
P + PP P P P GPP P + G PP P FFPP
Sbjct: 239 PQQGPPPPPGPFP-PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 297
Query: 666 ---FXKXPPXKXXXGGPP 710
+ PP G PP
Sbjct: 298 PTSDSRGPPPTDPYGRPP 315
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.9 bits (69), Expect = 3.0
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXP-XGXFFFPPXXXXFF 665
P + PP P P P GPP P + G PP P FFPP
Sbjct: 349 PQQGPPPPPGPFP-PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 407
Query: 666 ---FXKXPPXKXXXGGPP 710
+ PP G PP
Sbjct: 408 PTSDSRGPPPTDPYGRPP 425
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.9 bits (69), Expect = 3.0
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXP-XGXFFFPPXXXXFF 665
P + PP P P P GPP P + G PP P FFPP
Sbjct: 312 PQQGPPPPPGPFP-PRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 370
Query: 666 ---FXKXPPXKXXXGGPP 710
+ PP G PP
Sbjct: 371 PTSDSRGPPPTDPYGRPP 388
>D25218-1|BAA04948.1| 399|Homo sapiens KIAA0112 protein.
Length = 399
Score = 30.7 bits (66), Expect = 7.0
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 644 GKKKXPXGXXWGGPXNXXGKIXG--XKKKXXGPKXXGGXXKGG 522
G ++ P G GGP + GK G K GP GG KGG
Sbjct: 348 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 390
>BC013043-1|AAH13043.1| 365|Homo sapiens RRS1 ribosome biogenesis
regulator homolog (S. cerevisiae) protein.
Length = 365
Score = 30.7 bits (66), Expect = 7.0
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 644 GKKKXPXGXXWGGPXNXXGKIXG--XKKKXXGPKXXGGXXKGG 522
G ++ P G GGP + GK G K GP GG KGG
Sbjct: 314 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
>BC001811-1|AAH01811.1| 365|Homo sapiens RRS1 ribosome biogenesis
regulator homolog (S. cerevisiae) protein.
Length = 365
Score = 30.7 bits (66), Expect = 7.0
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 644 GKKKXPXGXXWGGPXNXXGKIXG--XKKKXXGPKXXGGXXKGG 522
G ++ P G GGP + GK G K GP GG KGG
Sbjct: 314 GGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG 356
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,179,858
Number of Sequences: 237096
Number of extensions: 1931107
Number of successful extensions: 2602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2524
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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