Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J20
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.0
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.4
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 9.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.7
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/78 (28%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Frame = +3
Query: 489 PXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXG----XFFFPPXXX 656
P P PPP P F PP F G P P G + PP
Sbjct: 370 PVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGG 429
Query: 657 XFFFXKXPPXKXXXGGPP 710
F PP GPP
Sbjct: 430 PGGFGPPPPGGPGAYGPP 447
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +3
Query: 519 PPPFXXXPXXF--GPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFFFXKXPPXKX 692
PPPF P F GPP F P + G P P FFPP F PP
Sbjct: 317 PPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG--PYPP----FFPPPPPHFMRPSSPP--- 367
Query: 693 XXGGP 707
GGP
Sbjct: 368 TDGGP 372
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +3
Query: 519 PPPFXXXPXXF--GPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFFFXKXPPXKX 692
PPPF P F GPP F P + G P P FFPP F PP
Sbjct: 317 PPPFMPPPPHFGMGPPRGFMPPPHPMMFRGG--PYPP----FFPPPPPHFMRPSSPP--- 367
Query: 693 XXGGP 707
GGP
Sbjct: 368 TDGGP 372
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -2
Query: 644 GKKKXPXGXXWGGPXNXXGKIXGXKKKXXGPKXXGGXXKGGGXXXXG 504
G + G GG N G+ G + GP GG +GGG G
Sbjct: 216 GSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGGGWGGWG 262
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 487 PXKKXXPXFXXPPPXKXPPXXLGPXXFFFXPXIFPXXXXGPP 612
P P PPP PP + P F P + P PP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/94 (28%), Positives = 28/94 (29%)
Frame = +3
Query: 429 GXXXGXPKIWGXKFFKXXXAPXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGX 608
G P I G P PP PPP P GPP P + G
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPP-PPPGGLPPITGGPPP--PPPPGGLPPISGG 757
Query: 609 PPXXPXGXFFFPPXXXXFFFXKXPPXKXXXGGPP 710
PP P PP PP GGPP
Sbjct: 758 PPPPPPPPGGCPPP------PPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/94 (28%), Positives = 28/94 (29%)
Frame = +3
Query: 429 GXXXGXPKIWGXKFFKXXXAPXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGX 608
G P I G P PP PPP P GPP P + G
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPP-PPPGGLPPITGGPPP--PPPPGGLPPISGG 757
Query: 609 PPXXPXGXFFFPPXXXXFFFXKXPPXKXXXGGPP 710
PP P PP PP GGPP
Sbjct: 758 PPPPPPPPGGCPPP------PPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.7
Identities = 27/94 (28%), Positives = 28/94 (29%)
Frame = +3
Query: 429 GXXXGXPKIWGXKFFKXXXAPXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGX 608
G P I G P PP PPP P GPP P + G
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPP-PPPGGLPPITGGPPP--PPPPGGLPPISGG 340
Query: 609 PPXXPXGXFFFPPXXXXFFFXKXPPXKXXXGGPP 710
PP P PP PP GGPP
Sbjct: 341 PPPPPPPPGGCPPP------PPPPPPGGFKGGPP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,365
Number of Sequences: 27780
Number of extensions: 257799
Number of successful extensions: 428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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