Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J20
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   3.9  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   6.9  
At2g05760.1 68415.m00620 xanthine/uracil permease family protein...    28   9.1  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/68 (22%), Positives = 20/68 (29%)
 Frame = +3

Query: 507 PXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFFFXKXPPX 686
           P   P P    P    PP   + P          PP      +  PP    +++   PP 
Sbjct: 735 PPPPPTPIHSPPPQSHPPCIEYSPPPPPTVHYNPPPPPSPAHYSPPPSPPVYYYNSPPPP 794

Query: 687 KXXXGGPP 710
                 PP
Sbjct: 795 PAVHYSPP 802


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/75 (24%), Positives = 24/75 (32%)
 Frame = +3

Query: 486 APXKXXPPXXXPPPFXXXPXXFGPPXFFFXPXNFSXXVXGXPPXXPXGXFFFPPXXXXFF 665
           +P    PP   PPP    P    PP     P  +       PP  P   + +PP    + 
Sbjct: 375 SPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPP-PYVYPPPPPPYV 433

Query: 666 FXKXPPXKXXXGGPP 710
           +   P        PP
Sbjct: 434 YPPPPSPPYVYPPPP 448


>At2g05760.1 68415.m00620 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 520

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 170 VLIIINLTEHLKHTEPFR 117
           +L++I LT++LKH  PF+
Sbjct: 188 LLLVIGLTQYLKHVRPFK 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,070
Number of Sequences: 28952
Number of extensions: 244447
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)