Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J18
         (892 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C3X2 Cluster: SJCHGC01439 protein; n=2; Schistosoma j...    35   3.2  
UniRef50_A0CUU7 Cluster: Chromosome undetermined scaffold_284, w...    34   5.6  
UniRef50_Q962J9 Cluster: PV1H14175_P; n=4; root|Rep: PV1H14175_P...    33   7.4  
UniRef50_Q8IU34 Cluster: Vitellogenin; n=2; Pteriomorphia|Rep: V...    33   7.4  
UniRef50_Q4XMB4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.8  

>UniRef50_Q5C3X2 Cluster: SJCHGC01439 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC01439 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 203

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 30  GNSLRFAYYFFQASRFNNKLSLCSIYVRYSVCVYFDK 140
           G S   AYY++       K+ +C+I+  Y  C+YF K
Sbjct: 60  GLSFIIAYYYYWPKTATGKMVICTIFAAYPFCIYFLK 96


>UniRef50_A0CUU7 Cluster: Chromosome undetermined scaffold_284, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_284, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1769

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 51   YYFFQASRFNNKLSLCSIYVRYSVCVYFDKCNENILNKT*KFSKKSSCQRNFLENGARC 227
            Y     +  +NK+   S+  +   C+Y DKCNE+I +   ++  +SSC     + G  C
Sbjct: 863  YSINSCNDLSNKVCNSSLMRKNQRCIYQDKCNEDICSS--RYVSQSSCSGQKTQFGISC 919


>UniRef50_Q962J9 Cluster: PV1H14175_P; n=4; root|Rep: PV1H14175_P -
            Plasmodium vivax
          Length = 3025

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
 Frame = -1

Query: 379  GYARLSGRESSRRVTSVARPVQRPSD--------VAGRRRPSHRAHATPAIELN-LKRRQ 227
            G+ R  G+   RR + V R  Q            + GR         TPA E N L  + 
Sbjct: 1803 GFLRCGGKRRRRRHSRVGRSNQSDGSNRIDGGNPIEGRTGQRAPRADTPAAETNYLTAQL 1862

Query: 226  HLAPFSRKFLWHDDFFENF*VLFKIFSLHLSKYTHTL 116
            H+ P    FL +  FF      FK++ +H ++++++L
Sbjct: 1863 HVKPCPCMFLMYVLFFSRIFRNFKMYFMHFTRFSYSL 1899


>UniRef50_Q8IU34 Cluster: Vitellogenin; n=2; Pteriomorphia|Rep:
           Vitellogenin - Crassostrea gigas (Pacific oyster)
           (Crassostrea angulata)
          Length = 1583

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 448 LTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRA 269
           LTF  +N    +    Q +VP   +  L+GR++ + +T ++RP+     V G  +  H  
Sbjct: 74  LTFAKINDPIESVDPTQQQVPAEMFQPLTGRDAEQMLTDLSRPINF-RYVRGNVKDIHHE 132

Query: 268 HATPAIELNLKR 233
              P   +N+K+
Sbjct: 133 ADDPEWSVNVKK 144


>UniRef50_Q4XMB4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 342

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 11/52 (21%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 231 DNILHHFLESSFGTMISLRTFKF-YSKYFHYTYRSIHTHCT*RKSNTKTIYY 79
           +NI    L++ F  ++S++   + ++ +F++ ++ I +HC   ++N   +Y+
Sbjct: 260 NNIYSKVLKTKFSNILSIQDINYLFNNFFYFLFKYIKSHCCFSQTNGANLYF 311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,986,044
Number of Sequences: 1657284
Number of extensions: 14588524
Number of successful extensions: 33354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33344
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)