Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J18
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39931| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 30   2.9  
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)                       29   5.1  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     29   6.7  
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)                 29   6.7  
SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)                28   8.8  
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    28   8.8  

>SB_39931| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1023

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 24  TIGNSLRFAYYFFQASRFNNKLSLCSIYVRYSVCV 128
           T   SLR  + +      + + S+CS YV+++VC+
Sbjct: 229 TFQKSLRHCFVYGNDRTAHGRSSICSFYVKFNVCI 263


>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
          Length = 913

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 173 LLSFIQNIFITLIEVYTHTVPNVNRTQRQFIIEPARLKKII 51
           ++SFI+++ ITLI ++  T  N+  T R    +P + K  I
Sbjct: 500 IISFIKSLIITLIIIHIITTKNIIITTRPAEFKPYKAKPFI 540


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 251 NGWGRVGPVRRPAASSDVARPLDWPR 328
           + WG V P  RP   SDV   +DW R
Sbjct: 502 SSWGWVCPQARPKVFSDVLAAMDWIR 527


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 251 NGWGRVGPVRRPAASSDVARPLDWPR 328
           + WG V P  RP   SDV   +DW R
Sbjct: 751 SSWGWVCPQARPKVFSDVLAAMDWIR 776


>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
          Length = 424

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 657 ICQSILVLGMAGRVASKFTCKLIANTFPLL*KCFFVLNSC--SGSKLNIKIYAIXS 818
           IC +  V+ M    A KF      N+ PLL   +FVL S   S S LN  +YA  S
Sbjct: 323 ICFAPFVIFMIYLTAEKFLNNQDKNSSPLLNYTYFVLTSLIFSNSCLNPVLYAFQS 378


>SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)
          Length = 258

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 284 PAASSDVARPLDWPRY*RDSPRRLATRQTRISIMG 388
           PA+  DV  P   PRY RD  RR + +  RIS+ G
Sbjct: 19  PASLPDVD-PSRLPRYLRDPTRRSSLQPRRISVQG 52


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 292 RRRPSHRAHATPAIELNLKRRQH 224
           +RRP HR +++P +   +KR+ H
Sbjct: 543 KRRPIHRTNSSPMLRKKVKRKSH 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,992,207
Number of Sequences: 59808
Number of extensions: 475727
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)