Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J18
         (892 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001747-1|AAN71502.1|  421|Drosophila melanogaster RE74585p pro...    31   2.8  
AE014297-123|AAN13285.1|  421|Drosophila melanogaster CG9775-PC,...    31   2.8  
AE014297-122|AAF52112.1|  421|Drosophila melanogaster CG9775-PA,...    31   2.8  
AE014297-3217|AAF56048.1|  919|Drosophila melanogaster CG4907-PA...    29   8.6  

>BT001747-1|AAN71502.1|  421|Drosophila melanogaster RE74585p
           protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/72 (34%), Positives = 31/72 (43%)
 Frame = -1

Query: 445 TFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAH 266
           T I +N  FT   ++Q+K P  G  R   R  SRR+ S     Q  S V  R     +  
Sbjct: 3   TGISLNERFT---QMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNSRLLNEFKRL 59

Query: 265 ATPAIELNLKRR 230
            T    L LKRR
Sbjct: 60  HTVQTALKLKRR 71


>AE014297-123|AAN13285.1|  421|Drosophila melanogaster CG9775-PC,
           isoform C protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/72 (34%), Positives = 31/72 (43%)
 Frame = -1

Query: 445 TFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAH 266
           T I +N  FT   ++Q+K P  G  R   R  SRR+ S     Q  S V  R     +  
Sbjct: 3   TGISLNERFT---QMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNSRLLNEFKRL 59

Query: 265 ATPAIELNLKRR 230
            T    L LKRR
Sbjct: 60  HTVQTALKLKRR 71


>AE014297-122|AAF52112.1|  421|Drosophila melanogaster CG9775-PA,
           isoform A protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/72 (34%), Positives = 31/72 (43%)
 Frame = -1

Query: 445 TFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAH 266
           T I +N  FT   ++Q+K P  G  R   R  SRR+ S     Q  S V  R     +  
Sbjct: 3   TGISLNERFT---QMQSKQPPQGRGRSRSRSRSRRIVSSGAGNQGMSAVNSRLLNEFKRL 59

Query: 265 ATPAIELNLKRR 230
            T    L LKRR
Sbjct: 60  HTVQTALKLKRR 71


>AE014297-3217|AAF56048.1|  919|Drosophila melanogaster CG4907-PA
           protein.
          Length = 919

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 606 NIFIAVYLHVV*VKFIVICQSILVLGMAGR--VASKFTCKLIANTFPLL*KCFFVLNSCS 779
           ++ +A  L  + +  I++  SI  L   GR  V S F C  + N    L  C+FV+N  S
Sbjct: 799 HMLVAFILLKIFIPSIIVMSSIYALVSFGRKNVRSIFICLFLMNDAMSLYFCYFVINRGS 858

Query: 780 GSKL 791
             K+
Sbjct: 859 LEKV 862


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,222,674
Number of Sequences: 53049
Number of extensions: 669073
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)