Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J18
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27510.1 68417.m03951 expressed protein  ; expression support...    32   0.59 
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    31   1.4  
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    29   4.1  

>At4g27510.1 68417.m03951 expressed protein  ; expression supported
           by MPSS
          Length = 677

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 48  AYYFFQASRFNNKLSLCSI-YVRYSVCVYFDKCNENILNKT 167
           +Y    A R NN+L   S+ Y + S+CV+   C+E++L++T
Sbjct: 382 SYQSDNAKRENNELVAYSVAYAKESLCVFDSSCSESMLSQT 422


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 117 SVCVYFDKCNENILNKT*KFSKKSSCQRNFLENGARCCRLFKFNSMAGVAWARCDGRRRP 296
           S C YF K  E  LN+  +F  K     + LE      +L K    AG+A+ +       
Sbjct: 94  SSCYYFQKKAEKKLNRRRRFDTKYEDAADLLEKARDSYKLAKSWDQAGIAYLKLADCHLK 153

Query: 297 ATSL 308
           A SL
Sbjct: 154 ANSL 157


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = -1

Query: 376 YARLSGRESSRRVTSVARPVQRPSD---VAGRRRPSHRAHATPAIELNLKRRQHL--APF 212
           Y  + G ES + + S  +P   P +    +G ++P      T       KR  HL   PF
Sbjct: 99  YREIQGHESDKFL-SYFKPCIIPLEGGVASGFKKPEEEEFETRLYTCKGKRAVHLKQVPF 157

Query: 211 SRKFLWHDDFF 179
           +R  L HDD F
Sbjct: 158 ARSSLNHDDVF 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,617,764
Number of Sequences: 28952
Number of extensions: 319593
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)