Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J17
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   0.79 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect(2) = 0.79
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 471 PPPXPXXKKKXPXPPPGXXP 412
           PPP P      P PPP   P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 0.79
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -3

Query: 675 PPXXPFFFP-PXXXGGPVXXXFVFXGXPPPPXXPRG 571
           PP      P P     PV       G PPPP  P G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect(2) = 2.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 607 PGXPPPPXXPP 575
           PG PPPP  PP
Sbjct: 6   PGNPPPPPPPP 16



 Score = 23.8 bits (49), Expect(2) = 4.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 471 PPPXPXXKKKXPXPPPGXXPP 409
           PPP P    + P  PP   PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 21.0 bits (42), Expect(2) = 4.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 603 GXPPPPXXPRG 571
           G PPPP  P G
Sbjct: 7   GNPPPPPPPPG 17



 Score = 21.0 bits (42), Expect(2) = 2.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 472 PPPPXXXKKKXSXXP 428
           PPPP   KK+ +  P
Sbjct: 27  PPPPGYVKKRKNKTP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,051
Number of Sequences: 5004
Number of extensions: 17522
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)