Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J16
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451    124   1e-28
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009    122   5e-28
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...   105   6e-23
12_01_0899 - 8689125-8689383,8689540-8689826                           30   2.8  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   5.0  
09_04_0201 + 15543318-15543488,15543956-15544069                       29   6.6  
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    29   6.6  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    29   6.6  
04_01_0053 + 551027-553024                                             28   8.7  
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     28   8.7  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score =  124 bits (298), Expect = 1e-28
 Identities = 58/110 (52%), Positives = 74/110 (67%)
 Frame = +3

Query: 240 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 419
           RLY +    GYKR   NQ+ENT+L+++EG   + +  +Y GK   YVY+AK ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 420 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 569
               T  R IWGKVTRPHGNSG VRAKFKSNLP  +MG ++RV +YPS I
Sbjct: 67  ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score =  122 bits (293), Expect = 5e-28
 Identities = 57/118 (48%), Positives = 77/118 (65%)
 Frame = +3

Query: 216 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 395
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK 
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 396 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 569
           ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +MG ++RV +YPS I
Sbjct: 62  KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score =  105 bits (251), Expect = 6e-23
 Identities = 50/105 (47%), Positives = 67/105 (63%)
 Frame = +3

Query: 216 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 395
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK 
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 396 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 530
           ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +M
Sbjct: 62  KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 544 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 410
           R+L P + A R  +  AR  LPE PC R+ LP+    +  LP  PP
Sbjct: 17  RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 563 GRIQHHSYSVSHSLGREVRLE 501
           GR+ HHS+ VS  L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 469 GRVTLPQIARSLVFLPRGPPGIGVLFL 389
           GR+  PQ + S V  PRG PG+ VL L
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVLLL 32


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 434 GFFATGTSGNWCPLLSSVHIDAMLA 360
           GFFA    G+WC LL+ ++I  + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 427 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 275
           +P+ PPG     LA +   Q L        R+FA  T   A  SC +RR R
Sbjct: 87  VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137


>04_01_0053 + 551027-553024
          Length = 665

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -2

Query: 476 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 387
           A++AGHL      P+   +GFFA+G+ G    LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/97 (24%), Positives = 36/97 (37%)
 Frame = +1

Query: 256 PYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVPVAKKP 435
           P S  +S       R  LSS ++   + M  S M +   S+C+    G++     +A  P
Sbjct: 385 PSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSP 444

Query: 436 SCVLSGAR*PAHMATLAVSEPSSSLTSLPRLWDTEYE 546
            C    A        L +  PSS+     R  D   E
Sbjct: 445 GCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKARE 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,752
Number of Sequences: 37544
Number of extensions: 337245
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)