Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J16
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 150 1e-36
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 30 2.6
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 30 2.6
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 29 3.4
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 29 3.4
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 29 3.4
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 150 bits (364), Expect = 1e-36
Identities = 71/121 (58%), Positives = 89/121 (73%)
Frame = +3
Query: 207 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYR 386
V R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGK VY+Y+
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65
Query: 387 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSR 566
A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G RIRV+LYPS
Sbjct: 66 AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSN 123
Query: 567 I 569
I
Sbjct: 124 I 124
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 509 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 354
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 509 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 354
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 288 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 437
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,386
Number of Sequences: 27780
Number of extensions: 254246
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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