Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J15
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.8  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   3.7  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   4.9  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 135 TNSSVMMISHNLVEIFSNTFTC-RHRCNIKSSNLKDS 28
           TNS +  ++ NL E+   +FT  ++R N KSS   DS
Sbjct: 312 TNSVIRQLAENLSELAEKSFTIEQNRENEKSSTKNDS 348


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 20  HYRESLRFEDLMLQRCLHVNVLLKISTKLCEIIMTDEF 133
           +Y+   +FE  + ++C H + + K+S K C+I+ + E+
Sbjct: 129 YYQPPEKFEQSLNEKCFHRSDVQKLS-KRCDILFSSEW 165


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 330 VLKVGESRHVRLDXEFPDAPVTXTLVQGFGVQ-YT*LDTIS 449
           V+ +    HVR++  F +  ++  LV+G G Q Y  +D +S
Sbjct: 578 VMTMAREHHVRIEANFANTVLSILLVEGAGRQLYPEMDLLS 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,529
Number of Sequences: 5004
Number of extensions: 39419
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)