Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J15
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     30   3.0  
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    29   3.9  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    28   9.1  

>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 62  RCLHVNVLLKISTKLCEIIMTDEFVYC 142
           RC HV ++  I+T LCEI +  E  +C
Sbjct: 759 RCSHVILIWHIATSLCEIKLAQEHDHC 785


>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 412 P*TRVXVTGASGNSMSRRTCLDSPTFNTAXGSFTASCSDMASTCIT 275
           P T    T A   S S + C DSPT +T+ G  T +     S   T
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 400  VXVTGASGNSMSRRTCLDSPTFNTAXGSFTASCSDMASTCITXNSSGLAXGXNNA 236
            V + G  G  + R     SP F    G+   +C D A+  +T   SG+A G   A
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAA--VTVLYSGVALGWARA 1192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,202
Number of Sequences: 37544
Number of extensions: 277747
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)