Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J15
         (921 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa...    29   4.3  
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa...    28   7.6  

>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
           family protein contains zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 622

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 527 SQFKDEDNEEGEPKGXKAKMSNNAKG 604
           S   +E+ EE EP   K KM NN+ G
Sbjct: 591 SNISEEEEEESEPPTKKIKMDNNSVG 616


>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
           family protein contains zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 617

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 527 SQFKDEDNEEGEPKGXKAKMSNNAKGXAAS 616
           +   +E+ EE EP   K KM NN+ G + +
Sbjct: 584 ASISEEEEEESEPPTKKIKMDNNSVGGSGT 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,355
Number of Sequences: 28952
Number of extensions: 217526
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)