Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J13
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 51 2e-07
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 8e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.004
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.010
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.023
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.031
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 32 0.093
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.093
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.22
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.38
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.50
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 30 0.50
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.66
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 0.66
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.66
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.87
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.87
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.87
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 1.1
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 28 1.5
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.5
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.5
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 27 2.7
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 4.6
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 6.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 6.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 8.1
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 50.8 bits (116), Expect = 2e-07
Identities = 39/146 (26%), Positives = 57/146 (39%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXX 359
+E R++VG +PP +D+ D F +G++ +D K G F FVE E
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQI--LDCKLMNG--FGFVEVEDARDARDIVNDF 57
Query: 360 XXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSG 539
G R+ VE +R++V L
Sbjct: 58 QGKEFMGSRIVVE--------PARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDV 109
Query: 540 SWQDLKDHMREAGDVCFADTFKDGSG 617
SWQDLKD MR+AG+ F D ++ G
Sbjct: 110 SWQDLKDVMRKAGEPTFTDAHRENPG 135
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 141 SLAIMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
S+ ++++RN +++GNLP K+I++ F KFGK+ + + ++K AFV F
Sbjct: 287 SIQNFCSNTAASRN---VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN--IAFVHF 341
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNR--------KGPP-FAFVEF 320
S+ + E IYVGNLP ++ D+ +LF FG + + +R K P FAF+ F
Sbjct: 14 STKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITF 73
Query: 321 EXXXXXXXXXXXXXXXXXXGYRLRVEF 401
E G L+VE+
Sbjct: 74 ENKCSADNAIASLNGSSFQGNTLKVEY 100
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDI--RTKDIQDLFYKFGKV 266
S+ + C ++V NL +I T+ +++LF KFG++
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRI 447
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGP 299
E RIYVG L I + D++ F +FG V+ +++ N+ P
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP 42
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG 296
N +YV LP +I T++++ F FG++ + + N G
Sbjct: 174 NNTAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSG 212
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEF 320
N +Y+ NL +I ++ DLF +FG++T + L +N K F FV +
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 141 SLAIMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFA 308
S+A SG + ++ + +YVG L P + + +LF G V + D R+ +A
Sbjct: 68 SVATPSGTAPTSAS---LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124
Query: 309 FVEF 320
+V F
Sbjct: 125 YVNF 128
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 32.3 bits (70), Expect = 0.093
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
IYVGNLPP ++++ LF + + + P FVEFE
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFE 471
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 32.3 bits (70), Expect = 0.093
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK---GPPFAFVEFE 323
R + ++VGNL P + + + F FG++ V L ++ +AFVEF+
Sbjct: 3 RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFD 54
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL----KNRKGPPFAFVEFE 323
IY+GNL D+ DI +F +FG+ ++L + K FAF+++E
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 519 TGLPPSGSWQDLKDHMREAGDVCFAD 596
T LP + WQDLKD R+AG V AD
Sbjct: 188 TLLPYNVRWQDLKDLFRQAGSVIRAD 213
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN 287
+ G + E R+YVGNL +R ++++ + G V ++ N
Sbjct: 55 LGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN 99
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
++C IYVGNLP +++ DLF G V
Sbjct: 279 SDC-IYVGNLPWATSDRNLLDLFTDIGSV 306
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRK---GPPFAFVEFE 323
+YVG LP K ++ F +FG V + + +NRK +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEF 320
SS +I + NLP + KD+Q L +G++ V + +R FAF EF
Sbjct: 715 SSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEF 768
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.50
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
E ++V N+PP+ ++ FG V ++ RKG A+V+F
Sbjct: 314 ETSVFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGT--AYVDF 357
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
++GG+S N IY+GN + + +++ F +FG++ +V+ K AFV F
Sbjct: 408 VAGGASRN-----IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN--CAFVNF 456
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKV-TF---VDLKNRKGPPFAFVEF 320
++VGN+P D+ + + ++F + G V TF +D + G + F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFEXXXXXXXXXX 353
C +YVGN+P ++ + + D+F + G V +D ++ + + F E+
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 354 XXXXXXXXGYRLRVEF 401
RLRV+F
Sbjct: 65 NLNNYDAGTRRLRVDF 80
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.87
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEF 320
+N + ++VGNLP D + +Q F + G+V V D + + +AFVEF
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEFE 323
S R+ +YV +R +++ F FG + D+ + R PFAFVE+E
Sbjct: 2 SRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYE 55
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 198 VGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEF 320
V NL D R ++++DLF +FG + V D + + FAFV +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
++VG L + ++++ LF FG++ +V + KG FV+F
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKG--CGFVQF 345
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
++ V N+ P++ K I D F GKV+ + + A ++FE
Sbjct: 4 QVIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQTAKIQFE 48
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPF 305
++VG L ++ KD+Q F FG++ + + KG F
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGF 336
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPP--FAFVEFE 323
+++VG +P D ++ ++ F +FG+V L K G P F FV +E
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK 293
N +I+ GN P++ K + + GKV V NR+
Sbjct: 4 NSIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRE 41
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 150 IMSGGSSSNRNECR-IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
+ S + + + C IYVGNL + K ++ F K + K + P FVEFE
Sbjct: 589 VESNVQTDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFE 647
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVT---FVDLKNRKGPPFAFVE 317
+ +YV N PP DI LF +G V F L+ F +V+
Sbjct: 665 DTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQ 712
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPP--FAFVEF 320
+YVGN+ + +++Q F G V V + K G P FA++EF
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYK 254
E +I V NLP D+ +++LF K
Sbjct: 54 ESKIIVSNLPTDVTEAQVKELFVK 77
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK 284
+++V N+ P + ++ ++ F FG+V +DLK
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLK 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,825
Number of Sequences: 5004
Number of extensions: 35366
Number of successful extensions: 120
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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