Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J13
(876 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 97 2e-20
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 52 6e-07
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 49 4e-06
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 43 3e-04
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 43 4e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.002
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 38 0.011
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.025
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 36 0.057
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.075
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 35 0.099
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 33 0.23
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 1.6
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 30 2.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 30 2.1
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 30 2.1
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 2.8
SB_30745| Best HMM Match : UIM (HMM E-Value=1.9) 30 2.8
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 30 2.8
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 29 6.5
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_55490| Best HMM Match : DUF1155 (HMM E-Value=7) 28 8.6
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 28 8.6
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 96.7 bits (230), Expect = 2e-20
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Frame = +3
Query: 141 SLAIMSGGSS-SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPPFAF 311
+L++MS + SN N+CR+YVGNLP D+R KD+ D+FYK+G + VDLKNR+ GPPFAF
Sbjct: 245 TLSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAF 304
Query: 312 VEFEXXXXXXXXXXXXXXXXXXGYRLRVEF 401
VEFE GYR+RVEF
Sbjct: 305 VEFEDPRDAEDAVKGRDGHEFDGYRIRVEF 334
Score = 73.7 bits (173), Expect = 2e-13
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +3
Query: 501 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
++RV V+GLPP+GSWQDLKDHMREAGDV F D FKDG+G
Sbjct: 379 DFRVQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKDGTG 417
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL 281
G R++ R+ V LPP +D++D + G V F D+
Sbjct: 372 GPPPRRSDFRVQVSGLPPTGSWQDLKDHMREAGDVLFTDV 411
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 52.0 bits (119), Expect = 6e-07
Identities = 38/144 (26%), Positives = 53/144 (36%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXX 365
CR+Y+G LP D++ F +G++ ++LKN G FVEFE
Sbjct: 3 CRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYG----FVEFEDDRDADDAVYECNG 58
Query: 366 XXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGSW 545
G R+ VE +R+ + L SW
Sbjct: 59 KEMLGERILVE--------HSRGGARSSSSRPSRGRDKYGPPVRTPWRMTIENLSSRVSW 110
Query: 546 QDLKDHMREAGDVCFADTFKDGSG 617
QDLKD R+ GDV + D K G
Sbjct: 111 QDLKDFCRQVGDVTYGDAHKQRQG 134
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 49.2 bits (112), Expect = 4e-06
Identities = 36/143 (25%), Positives = 54/143 (37%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
++Y G LP KD+++L FGKV VD K +A+V F+
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDFKEG----YAYVVFKENKDADRAVAALNNS 59
Query: 369 XXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGSWQ 548
G ++ +E E+RV+V L W
Sbjct: 60 EFHGAKILME---KAKEMRNGVGGYTAAGGYTARTRQMGPPVRSEFRVIVENLSTRAKWL 116
Query: 549 DLKDHMREAGDVCFADTFKDGSG 617
+LK+ M AG+VC+ADT + G
Sbjct: 117 ELKEFMNNAGEVCYADTHRRRPG 139
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3
Query: 501 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
EYR++V L WQDLKD+MR+AG+V F KD G
Sbjct: 342 EYRLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVG 380
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 501 EYRVLVTGLPPSGSWQDLKDHMRE-AGDVCFADTFKDGSG 617
E +V V+ +P WQ+LKDHM + GDV FA+ F+D G
Sbjct: 92 EKKVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEKG 131
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 42.7 bits (96), Expect = 4e-04
Identities = 37/144 (25%), Positives = 49/144 (34%), Gaps = 7/144 (4%)
Frame = +3
Query: 207 LPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXXXXXGYR 386
LP D+R D++ +GK+ + LK G FVEF+ G R
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKRGYG----FVEFDDHRDAEDAVHDLNGRDLIGER 751
Query: 387 LRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EYRVLVTGLPPSGSW 545
+ VEF Y V+V L SW
Sbjct: 752 VVVEFSKGRRSEGGGRDRRDFSGRGGRDGGRRPMWLDKYGPPVRTNYSVIVENLSSRTSW 811
Query: 546 QDLKDHMREAGDVCFADTFKDGSG 617
QDLKD+ R+ G V +AD K G
Sbjct: 812 QDLKDYFRKYGKVTYADAHKKRIG 835
Score = 33.1 bits (72), Expect = 0.30
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKGPPFAFVEFEXXXXXXXXXX 353
R + V NL +D++D F K+GKVT+ D K R G VEFE
Sbjct: 795 RTNYSVIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGE--GVVEFESKDDLNTAIE 852
Query: 354 XXXXXXXXGYRLRV 395
G R+RV
Sbjct: 853 KLDDTELGGRRIRV 866
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK----NRKGPPFAFVEFE 323
CR+YVG++ ++R + I+ F+ FG + +DL N K FAFVE++
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
Score = 34.7 bits (76), Expect = 0.099
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNR----KGPPFAFVEFE 323
RIY+ ++ PD+ DI+ +F FGKV L K + F+E+E
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYE 248
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 37.9 bits (84), Expect = 0.011
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Frame = +3
Query: 159 GGSSSNRNE------CR--IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG-PPFAF 311
GGS SN +E C ++VGN+ D+++ F ++G+V VD+K + G P+AF
Sbjct: 232 GGSISNYSEDEFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAF 291
Query: 312 VEF 320
V+F
Sbjct: 292 VQF 294
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEF 320
R ++VGNLP +IR +DI F ++G+V V + ++ +G +FV+F
Sbjct: 3 RETRHLWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDF 53
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 37.9 bits (84), Expect = 0.011
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFV 314
S++ +YVGNLPPD++ ++Q +F ++G + + KG +AF+
Sbjct: 610 SSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKG--YAFI 655
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVT---FVDLKNRKGPPFAFVEFE 323
+YVGNL P + I +F K KV ++ KG P+ FVEFE
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKG-PYCFVEFE 416
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 37.1 bits (82), Expect = 0.019
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEF 320
MSGG + +++ +YVGNLP + D+ +F ++GKV V D + R+ AF+ F
Sbjct: 1 MSGGLAPSKST--VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILF 58
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 36.7 bits (81), Expect = 0.025
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
++YVGNL + + +++ F KFG+++ V + R P FAFVE+E
Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVA-RNPPGFAFVEYE 48
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 36.3 bits (80), Expect = 0.033
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
+++VG L + + +D++++FY +GK+ DLK G F+E+E
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKTAYG----FIEYEDPRDAEEAMRRENNR 62
Query: 369 XXXGYRLRVEF 401
G R+ VE+
Sbjct: 63 KLFGSRIVVEY 73
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 36.3 bits (80), Expect = 0.033
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKGPP--FAFVEFE 323
++V NLP D + +I++LF K G V V L NR G P + +VE+E
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYE 219
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 35.5 bits (78), Expect = 0.057
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 186 CRIYVGNLPPD-IRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
CRI++GNL D I +D++++F + GKV L F FV+FE
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN----FGFVQFE 88
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 35.1 bits (77), Expect = 0.075
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL 281
N+C+++VGN+ +R ++++D F FG V + +
Sbjct: 77 NKCKVFVGNIGFKVRARELKDFFGYFGDVVYAQI 110
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 34.7 bits (76), Expect = 0.099
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+Y+G LP R D++ FY +G+ ++ + G + FVEF+
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG--YGFVEFD 46
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEF 320
++VGNL I +D++ F KFG V VD+K +G +AFV+F
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKF 284
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXX 341
G ++ R++VG L P I +++ F +FG + +D RKG A++ ++
Sbjct: 310 GYGRSQQTTRLWVGGLGPWISIPELEREFDRFGAIRRIDY--RKGGDHAYILYDSLDAAS 367
Query: 342 XXXXXXXXXXXXGYRLRVEF 401
RLR++F
Sbjct: 368 VAAREMRGFQMGDRRLRIDF 387
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 33.5 bits (73), Expect = 0.23
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRK---GPPFAFVEF 320
++ ++ ++ +++GNLP DI + +++LF G V V L ++RK G F +V F
Sbjct: 45 LASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLF 104
Query: 321 E 323
E
Sbjct: 105 E 105
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKV---TFVDLKNRKGPPFAFVEF 320
EC+ Y+GNL + D+QD F ++ V D + ++ FAFV F
Sbjct: 229 ECKCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTF 277
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+Y G LP D R +D++ +G+V + +K G FVEF+
Sbjct: 6 RVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYG----FVEFD 46
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 546 QDLKDHMREAGDVCFADTFKDGSG 617
QDLK++M + G+V FAD K G
Sbjct: 126 QDLKEYMGKVGEVTFADAHKRRQG 149
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 32.3 bits (70), Expect = 0.53
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPF 305
++R+ +YVG L + +D++D FY+FG++ + + R+ F
Sbjct: 299 TDRSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAF 343
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 32.3 bits (70), Expect = 0.53
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGK-VTFVDLK--NRKGPPFAFVEFE 323
SS+ +Y+ LP D++ ++++ LF FGK +T LK + +G FV F+
Sbjct: 106 SSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFD 161
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
R+Y+GN+ + ++I+ F FG + V + R P FAF FE
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVA-RNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 369 XXXGYRLRVE 398
G R RVE
Sbjct: 62 YICGQRARVE 71
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 186 CR-IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG 296
CR +++G LP I I ++FY G++T + + KG
Sbjct: 350 CRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKG 387
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVT 269
+++VG LPPDI +I F +FG +T
Sbjct: 345 KVFVGGLPPDIDEDEIHASFCRFGSLT 371
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 1.6
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
++++GNLP ++ D+ ++F K+G +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 150 IMSGGSSSNR--NECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
I +GG++S R N +++VG +P KD++ +F +G++
Sbjct: 156 ITNGGTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQI 196
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL----KNRKGPPFAFVEF 320
++YV +L ++ +Q++F +G+V VDL N FA+VE+
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEY 1205
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 546 QDLKDHMREAGDVCFADTFKDGSG 617
QDLKD+ R+ GDV + D K G
Sbjct: 181 QDLKDYCRQIGDVTYGDAHKQKQG 204
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK--NRKGPP--FAFVEFE 323
+++VG L + + +++ F K+G++ VD+K G P FAFV+F+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK 78
>SB_30745| Best HMM Match : UIM (HMM E-Value=1.9)
Length = 116
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 501 EYRVLVTGLPPSGSWQDLKDHMRE 572
E +V V+ +P WQ+LKDHM +
Sbjct: 92 EKKVFVSNIPFESRWQNLKDHMNK 115
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL----KNRKGPPFAFVEF 320
IY+G++P +I+ F +FG V + L K+ + +AFVEF
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF 146
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP--FAFVEF 320
++V NL P+I + + F G + ++ + G P +A++EF
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEF 118
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN 287
++VGNLP ++ K ++ F K+G+V V ++
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESVRFRS 54
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+++VG LP K + + F +FG+VT V + + F FV F
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIP-KPFRHFGFVTF 242
>SB_55490| Best HMM Match : DUF1155 (HMM E-Value=7)
Length = 199
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 138 YSLAIMSGG----SSSNRNECRIYVGNLPPD 218
Y +A++S G + N CR YV NLPP+
Sbjct: 146 YDIALVSAGLLTLETRRNNLCRQYVANLPPE 176
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+YVG+L PD+ + + F G V + DL R+ +A+V F+
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQ 62
>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 356 GSYCIICISGILKFHEREWRTFSV 285
G YC +C+ G+ F EW FS+
Sbjct: 277 GQYCFLCVPGVSMF---EWHPFSI 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,073
Number of Sequences: 59808
Number of extensions: 277403
Number of successful extensions: 914
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -