Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J13
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 121 6e-28
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 121 6e-28
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 45 6e-05
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 45 6e-05
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 45 6e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 39 0.005
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 39 0.005
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 39 0.005
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 38 0.007
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 38 0.007
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 36 0.029
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 36 0.029
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.038
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.050
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.050
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.050
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 35 0.066
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 35 0.066
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 35 0.088
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 35 0.088
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 35 0.088
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 34 0.15
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 34 0.15
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 34 0.15
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 33 0.27
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 33 0.35
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.35
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.35
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.35
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 33 0.35
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 0.82
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.82
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.82
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.82
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 31 0.82
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 31 0.82
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 31 0.82
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.82
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.1
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 31 1.1
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 1.4
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 1.4
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 30 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.9
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 30 2.5
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 29 5.8
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 7.6
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 7.6
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 7.6
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 121 bits (292), Expect = 6e-28
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
++YVGNLP D+R K+++D+F+K+G++ +VD+K+ +GP FAFVEFE
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 369 XXXGYRLRVEF--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTG 524
G R+RVEF YRV+V G
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129
Query: 525 LPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
LPP+GSWQDLKDHMR+AGDVC+AD +DG+G
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTG 160
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 121 bits (292), Expect = 6e-28
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 8/151 (5%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
++YVGNLP D+R K+++D+F+K+G++ +VD+K+ +GP FAFVEFE
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 369 XXXGYRLRVEF--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTG 524
G R+RVEF YRV+V G
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPSGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129
Query: 525 LPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
LPP+GSWQDLKDHMR+AGDVC+AD +DG+G
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTG 160
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXX 362
+ ++YVG LP D +++++++F +FG++ V + R+ P FAFVE++
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-RRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 363 XXXXXGYRLRVE 398
G R RVE
Sbjct: 61 GSRICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXX 362
+ ++YVG LP D +++++++F +FG++ V + R+ P FAFVE++
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-RRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 363 XXXXXGYRLRVE 398
G R RVE
Sbjct: 61 GSRICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXX 362
+ ++YVG LP D +++++++F +FG++ V + R+ P FAFVE++
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVA-RRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 363 XXXXXGYRLRVE 398
G R RVE
Sbjct: 61 GSRICGVRARVE 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
R+Y+G LP +D++ F +GK++ V +KN F FV+F+
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN----GFGFVDFQDQRDADDAVHDLNGK 58
Query: 369 XXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEY--------RVLVTG 524
G R+ +EF Y R+++
Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 525 LPPSGSWQDLKDHMREAG 578
L SWQD+KDH+R+ G
Sbjct: 119 LSTRYSWQDIKDHIRKLG 136
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN--RKGPPFAFVEFE 323
++VGN+P D++ ++I+ +F + GKV VD+K +AFV F+
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQ 216
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN--RKGPPFAFVEFE 323
++VGN+P D++ ++I+ +F + GKV VD+K +AFV F+
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQ 216
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN--RKGPPFAFVEFE 323
++VGN+P D++ ++I+ +F + GKV VD+K +AFV F+
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQ 193
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK----NRKGPPFAFVEF 320
+G S+ + +I+VG + P++ +D+ F ++G+V +K N + FAFVEF
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+ +R +++VG LP D +D++ F +FGKV + D + + FAF+ FE
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK----NRKGPPFAFVEF 320
+G S+ + +I+VG + P++ +D+ F ++G+V +K N + FAFVEF
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+ +R +++VG LP D +D++ F +FGKV + D + + FAF+ FE
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 36.3 bits (80), Expect = 0.029
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 174 NRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEF 320
N+ + V NL P I K I+D+F FG++ +DL+ NR+ FA + F
Sbjct: 123 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITF 174
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 36.3 bits (80), Expect = 0.029
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 174 NRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEF 320
N+ + V NL P I K I+D+F FG++ +DL+ NR+ FA + F
Sbjct: 268 NKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITF 319
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.038
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPP--FAFVEFE 323
S+ N CR V NLP ++ +++DLF K G+V + + K G P FAFV FE
Sbjct: 173 SDENTCR--VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFE 225
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.5 bits (78), Expect = 0.050
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
RIY+G L + KDI+ F +G++ V LKN F FVEF+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN----GFGFVEFD 44
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.5 bits (78), Expect = 0.050
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
RIY+G L + KDI+ F +G++ V LKN F FVEF+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN----GFGFVEFD 44
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.5 bits (78), Expect = 0.050
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
RIY+G L + KDI+ F +G++ V LKN F FVEF+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN----GFGFVEFD 44
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 504 YRVLVTGLPPSGSWQDLKDHMREAG-DVCFADTFK 605
+RV+V L SWQDLKD +R G + +A+ K
Sbjct: 129 HRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK 163
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXX 365
CR++VGNLP +++ ++++LF G + L G FAF+ +
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYL---SGKGFAFLRLDTRAHAESAKEAIDG 172
Query: 366 XXXXGYRLRVEF 401
G ++RV F
Sbjct: 173 RIIHGRQVRVRF 184
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 35.1 bits (77), Expect = 0.066
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXX 365
CR++VGNLP +++ ++++LF G + L G FAF+ +
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYL---SGKGFAFLRLDTRAHAESAKEAIDG 172
Query: 366 XXXXGYRLRVEF 401
G ++RV F
Sbjct: 173 RIIHGRQVRVRF 184
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 34.7 bits (76), Expect = 0.088
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPD----IRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+Y+GNL P + KD+ D FY++G + + + KG AF+EF
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKG--CAFIEF 281
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
RIYV N+P R +D+ +F+ +G+V V++ +R F FV +
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLD 98
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
RIYV N+P R +D+ +F+ +G+V V++ +R F FV +
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLD 98
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+Y+G +P + R +D++ +GK+ + +K FAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY----GFAFVDFE 43
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+Y+G +P + R +D++ +GK+ + +K FAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY----GFAFVDFE 43
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+Y+G +P + R +D++ +GK+ + +K FAFV+FE
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY----GFAFVDFE 43
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 186 CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFV 314
CR++VGNLP +++ ++++LF G + L G FAF+
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYL---SGKGFAFL 155
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNR 290
+++VG +P ++ KD++ LF +FGK+ F LK++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDK 64
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN 287
+S+ N ++VGN+P + K ++ +F FG ++ V ++N
Sbjct: 136 ASAAENALTVFVGNMPLTMNEKSVRRIFSDFGTISSVRMRN 176
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
R++V N+P R D++ +F KFG V+ V++ R F FV E
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTME 200
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
R++V N+P R D++ +F KFG V+ V++ R F FV E
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTME 200
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNR 290
+++VG +P ++ KD++ LF +FGK+ F LK++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDK 64
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKD-IQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
R+++GN+ I T+D I +LF FGK+ V+ ++G F FV+F
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQG--FGFVQF 126
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
+S+ + +YVGN+ D++DLF +G + +++ K +AFV +E
Sbjct: 230 NSTKADNTSVYVGNISQQTTDADLRDLFSTYGDI--AEVRIFKTQRYAFVRYE 280
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVT----FVDLKNRKGPPFAFVEF 320
++VG+L D+ + ++ F KFG+V+ D++ +K + FV F
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSF 183
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKF 257
+GGSS++ + RI + NL + + D+Q+LF F
Sbjct: 70 AGGSSNDNKQVRINISNLAETVISSDLQELFGAF 103
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVT----FVDLKNRKGPPFAFVEF 320
R+++ NLP + D+Q LF K+G+V+ +D K FA VEF
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
M + NRNE ++++G L ++++++F KFG +
Sbjct: 131 MKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHI 168
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKGPPFAFVEFE 323
+++VGNLP ++ + ++ +F F KVT D+ KN +AFV E
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN-----YAFVHIE 44
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKGPPFAFVEFE 323
+++VGNLP ++ + ++ +F F KVT D+ KN +AFV E
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN-----YAFVHIE 44
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
S SSS R++V N+P R D+ +F K G V V++ R F FV +
Sbjct: 90 STSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQ 147
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVD-LKNRKGPPFAFVEF 320
+YVGNL + I LF + G VT + + P+AFVEF
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEF 91
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL--KNRKGPPFAFVEFE 323
S SSS R++V N+P R D+ +F K G V V++ R F FV +
Sbjct: 90 STSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQ 147
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFV-----DLKNRKGPPFAFVEF 320
I+VGNL P++ K + D F FG + V D+ + FAF+ F
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
++V N+PPD+ ++ L ++G V+ + KG AFVE+E
Sbjct: 123 VHVRNIPPDLVDVELMQLCIQYGPVS--NYMMLKGKSQAFVEYE 164
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFV-----DLKNRKGPPFAFVEF 320
I+VGNL P++ K + D F FG + V D+ + FAF+ F
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 159
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN-RKGPPFAFVEFE 323
+Y+ NLP I T+++ ++F KFG V + + N + AFV +E
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYE 65
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKV--TFVDLKNRKGPP--FAFVEF 320
R C +YVGNL + + +LF + G V + L K P F FVE+
Sbjct: 34 RTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEY 85
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEFE 323
+YV N+ D+ ++D F FG +T + +N + F FV FE
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFE 391
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVEFE 323
+YV N+ D+ ++D F FG +T + +N + F FV FE
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFE 391
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRK--GPPFAFVEFE 323
E IYV N ++ + +++LF + G V V L++ + FA VEFE
Sbjct: 12 ERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFE 60
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
R+YV ++ PD+ D++ +F FG++
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEI 233
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
R+YV ++ PD+ D++ +F FG++
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEI 233
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
R+YV ++ PD+ D++ +F FG++
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEI 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,482
Number of Sequences: 27780
Number of extensions: 203297
Number of successful extensions: 603
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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