Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J13
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.52 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.5  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   8.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 383 VPIIVVTIPGSYCIICISGILKFHEREWRTFS 288
           VP   V I  SYC  CISG   F    W  +S
Sbjct: 286 VPFFCVNIVTSYCKTCISG-RAFQVLTWLGYS 316


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 501 EYRVLVTGLPPSGSWQDL 554
           EY +   GLPPS +  DL
Sbjct: 440 EYEIPAHGLPPSATRYDL 457


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 IQDLFYKFGKVTFVDLKN 287
           I  LFY+FG +T V L +
Sbjct: 59  IVGLFYEFGLITHVKLSS 76


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 219 CPVVSFQHIYDTHFCCYC 166
           CP+  F+H   +H C  C
Sbjct: 265 CPIGKFKHEAGSHSCEAC 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,205
Number of Sequences: 438
Number of extensions: 2604
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)