Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J13
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 113 1e-25
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 106 2e-23
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 106 2e-23
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 106 2e-23
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 106 2e-23
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 106 2e-23
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 100 1e-21
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 43 3e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 0.001
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 41 0.001
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 41 0.001
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 40 0.002
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 40 0.003
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 40 0.003
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 39 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 39 0.004
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 39 0.005
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 39 0.005
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 39 0.005
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 37 0.015
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 37 0.015
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 37 0.020
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.036
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.036
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.036
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.047
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 34 0.11
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.11
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.14
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.25
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.33
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 32 0.44
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 32 0.44
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.44
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 32 0.44
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.44
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 31 0.76
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.76
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 0.76
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.76
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 31 1.0
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 1.0
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 1.0
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 1.3
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 1.3
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 1.3
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 1.3
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 1.3
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 1.3
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 1.3
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 1.3
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 30 1.8
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 30 1.8
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 30 1.8
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.8
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 30 1.8
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 30 2.3
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 2.3
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 30 2.3
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 30 2.3
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 30 2.3
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 30 2.3
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 30 2.3
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 2.3
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 3.1
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 3.1
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 3.1
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 29 3.1
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 3.1
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 29 3.1
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 29 4.1
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 4.1
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 4.1
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 4.1
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 29 4.1
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 4.1
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 5.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 5.4
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 29 5.4
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 5.4
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 5.4
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 29 5.4
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 29 5.4
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 28 7.1
At5g21940.1 68418.m02547 expressed protein supported by full len... 28 7.1
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 7.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 7.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 7.1
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 9.4
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 9.4
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 9.4
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 28 9.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 28 9.4
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 28 9.4
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 28 9.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 28 9.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 28 9.4
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 113 bits (272), Expect = 1e-25
Identities = 65/150 (43%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R IYVGNLP DIR +++DLFYK+G + +DLK PP +AFVEFE
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGL 527
G RLRVE +YRVLVTGL
Sbjct: 62 IYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRS-----DYRVLVTGL 116
Query: 528 PPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
PPS SWQDLKDHMR+AGDVCF++ F D G
Sbjct: 117 PPSASWQDLKDHMRKAGDVCFSEVFPDRKG 146
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 106 bits (255), Expect = 2e-23
Identities = 60/155 (38%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R+ +YVGNLP DIR ++++DLF K+G V +DLK PP +AFVEF+
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRV 512
G+RLRVE E+RV
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 513 LVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
LVTGLP S SWQDLKDHMR+ GDVCF+ ++D G
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARG 156
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 106 bits (255), Expect = 2e-23
Identities = 60/155 (38%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R+ +YVGNLP DIR ++++DLF K+G V +DLK PP +AFVEF+
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRV 512
G+RLRVE E+RV
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 513 LVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
LVTGLP S SWQDLKDHMR+ GDVCF+ ++D G
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARG 156
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 106 bits (255), Expect = 2e-23
Identities = 60/155 (38%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R+ +YVGNLP DIR ++++DLF K+G V +DLK PP +AFVEF+
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRV 512
G+RLRVE E+RV
Sbjct: 62 IHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 513 LVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
LVTGLP S SWQDLKDHMR+ GDVCF+ ++D G
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARG 156
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 106 bits (254), Expect = 2e-23
Identities = 61/156 (39%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R+ IYVGNLP DIR ++++DLF K+G V +DLK PP +AFVEFE
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------EYR 509
G+ LRVE EYR
Sbjct: 62 IYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYR 121
Query: 510 VLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
V+V+GLP S SWQDLKDHMR+ G+VCF+ F+DG G
Sbjct: 122 VVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRG 157
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 106 bits (254), Expect = 2e-23
Identities = 61/156 (39%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S+R+ IYVGNLP DIR ++++DLF K+G V +DLK PP +AFVEFE
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------EYR 509
G+ LRVE EYR
Sbjct: 62 IYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYR 121
Query: 510 VLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
V+V+GLP S SWQDLKDHMR+ G+VCF+ F+DG G
Sbjct: 122 VVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRG 157
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 100 bits (240), Expect = 1e-21
Identities = 60/158 (37%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFEXXXXXXXX 347
S R IYVGNLP DIR +I+D+FYK+G++ ++LK PP + FVEFE
Sbjct: 2 SGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDA 61
Query: 348 XXXXXXXXXXGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------E 503
G RLRVE E
Sbjct: 62 IKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSE 121
Query: 504 YRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSG 617
+RV+V GLP S SWQDLKDHMR+AGDVCFA+ +D G
Sbjct: 122 FRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDG 159
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
R+YVG L RT+D++ LF ++G+V VD+K +AFVEF
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR----DYAFVEFGDPRDADDARHYLDGR 67
Query: 369 XXXGYRLRVEF 401
G R+ VEF
Sbjct: 68 DFDGSRITVEF 78
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXX 368
R+YVG L RT+D++ LF ++G+V VD+K +AFVEF
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR----DYAFVEFSDPRDADDARYYLDGR 67
Query: 369 XXXGYRLRVE 398
G R+ VE
Sbjct: 68 DFDGSRITVE 77
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+YVGNL P + ++++D F FG V V + R+ P +AF++FE
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVA-RRPPGYAFLDFE 46
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+YVGNL P + ++++D F FG + V + R+ P +AF++FE
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVA-RRPPGYAFLDFE 46
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
+YVGN D R D++ LF KFG+V VD+K+ +AFV FE
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS----GYAFVYFE 43
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXXX 371
++ GN D R D++ LF K+GKV VD+K G F ++E E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMK--AGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 372 XXGYRLRVEF 401
G RLRVE+
Sbjct: 62 RTGRRLRVEW 71
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXXX 371
++ GN D R D++ LF K+GKV VD+K G F ++E E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMK--AGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 372 XXGYRLRVEF 401
G RLRVE+
Sbjct: 62 RTGRRLRVEW 71
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+YVGNL P + ++++D F FG + V + R+ P +AF+EF+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA-RRPPGYAFLEFD 46
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
R+YVGNL P + ++++D F FG + V + R+ P +AF+EF+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVA-RRPPGYAFLEFD 46
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 174 NRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
N + RIY+ NLPPD+ T +++DLF G+V
Sbjct: 276 NCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 174 NRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
N + RIY+ NLPPD+ T +++DLF G+V
Sbjct: 276 NCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXXXXXXXXXXXX 371
++ GN D R D++ LF K+GKV VD+K G F ++E E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMK--AGFAFVYMEDERDAEDAIRALDRFEFG 61
Query: 372 XXGYRLRVEF 401
G RLRVE+
Sbjct: 62 RKGRRLRVEW 71
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPD-IRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
SSS R ++V N D RT+D++ F +GK+ V ++ FAF+++E
Sbjct: 90 SSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN----FAFIQYE 139
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFG--KVTFVDLKNRK---GPPFAFVEFE 323
+YV NLP DI +I++ F FG K V L+ RK G +AFVEFE
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFE 307
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFG--KVTFVDLKNRK---GPPFAFVEFE 323
+YV NLP DI +I++ F FG K V L+ RK G +AFVEFE
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFE 366
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEXXXXXX 341
G N ++VGNLP I +++ D F +FG++ L + G +AFV F
Sbjct: 15 GRGRNPPSRHLWVGNLPHGILERELADRFLRFGELE--SLAFQPGRSYAFVNFNHDEDAF 72
Query: 342 XXXXXXXXXXXXGYRLRVEF 401
G LR+EF
Sbjct: 73 AAIESLQGFPLSGNPLRIEF 92
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 35.9 bits (79), Expect = 0.036
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
++VGN + R D++ LF K+G+V VD+K+ +AFV FE
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS----GYAFVYFE 43
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+YVGNL P++ D+ LFY G +++ ++ F FV +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRY 317
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+YVGNL P++ D+ LFY G +++ ++ F FV +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRY 313
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
SGG + N+ + +I+VG LPP + ++ + F +G VT V D + F FV F+
Sbjct: 101 SGGDAYNKTK-KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFD 159
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLK---NRKGPPFAFVEFE 323
IYV NLP D ++++F FG + ++ N++G F FVEFE
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFE 341
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVT---FVDLKNRKGPPFAFVEFE 323
++V NLP + +QD+F KFG + L++ K + FV+FE
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFE 160
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
S G S+N I+VG + PD+ +D++ F +FG+V V + KG FV+F
Sbjct: 314 SDGESTNAT---IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG--CGFVQF 363
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 153 MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
MS G S+N I+VG L D+ +D+ F FG+V V + KG FV+F
Sbjct: 319 MSDGESNNST---IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKG--CGFVQF 369
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV--TFVDLKNRKGPP--FAFVEF 320
GG + + V N+P D R +++++ F +FG V ++ G P FAFVEF
Sbjct: 38 GGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
R++VG L + D+ +F G V V+ KG FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFG--KVTFVDLKNRKGPPFAFVEFE 323
IY+ LP D +++ F KFG + + ++++KG F FVEFE
Sbjct: 314 IYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFE 359
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+N +YVGNL P++ D+ F+ G +++ ++ F FV +
Sbjct: 260 NNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRY 309
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGP--PFAFVEFE 323
+E +++ LP D+ I+D KFG + + + + GP FAFV+FE
Sbjct: 743 HEASVFLKRLPLDVTFALIEDALKKFGPINAISI-IKSGPLYKFAFVDFE 791
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 180 NECRIYVGNLPPDIRTKDIQDLFYKFGKVT--FVDLKNRKGPPFAFVEFE 323
N I V NLP + +++ F +FG++ V+++N++ + FVEF+
Sbjct: 1074 NNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFK 1123
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 159 GGSSSNRNECRIY----VGNLPPDIRTKDIQDLFYKFGKV 266
GG+ +N+ +Y V NLPP++ T +++ F +FG +
Sbjct: 1183 GGNENNQEPRALYAAVHVKNLPPNVTTDWVENAFKQFGPI 1222
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
+N +YVGNL P++ D+ F+ G +++ ++ F FV +
Sbjct: 255 NNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY 304
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEF 320
S N E +IYV LP RT+ + F +FG++ + D ++ F FV F
Sbjct: 2 SHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
RIYVGNLP D+ + ++ LF + GKV
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKV 233
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL 281
R E +I+VGNLP I+ + ++ F +FG + V L
Sbjct: 162 RQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVIL 196
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
R+YVGNLP D+ ++ LF + GKV
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKV 270
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNR----KGPPFAFVEFE 323
IYV NLP D ++++F FG + ++ R +G F FVEFE
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFE 342
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNRKGPP--FAFVEFE 323
G SS R +Y+ NL + + + +F FGKV V K+ +G FAF+EFE
Sbjct: 8 GSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 165 SSSNRNE-CRIYVGNLPPDIRTKDIQDLFYKFGKVT-FVDLKNRKGPP--FAFVEFE 323
S++N+ + +YV NL D+++ F ++GK+T V +K+ +G F FV FE
Sbjct: 21 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG 296
R E +++VG LP ++ ++Q LF K+G T DL+ +G
Sbjct: 103 RLEHKLFVGMLPKNVSEAEVQSLFSKYG--TIKDLQILRG 140
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 177 RNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG 296
R E +++VG LP ++ ++Q LF K+G T DL+ +G
Sbjct: 103 RLEHKLFVGMLPKNVSEAEVQSLFSKYG--TIKDLQILRG 140
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKG--PPFAFVEF 320
+YV N+P + T+ +++LF + G+VT + KG F FV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHY 338
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFE 323
G S + +I+VG +P + +++D F K+G V D + + F FV F+
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFE 323
G S + +I+VG +P + +++D F K+G V D + + F FV F+
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVT----FVDLKNRKGPPFAFVEFE 323
S +N +I+VG LPP + + + + F +G V+ +D ++ F FV F+
Sbjct: 103 SGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFD 159
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKG--PPFAFVEF 320
R+YVGNL ++ D++ +F FG V V + ++ G F FV+F
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQF 332
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNRKGPP--FAFVEFE 323
+YV NLP +I +++ F KFG + + V ++++ G F FV FE
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
GG+ +I+VG LP I + ++ F +FG + V D ++ F F+ F+
Sbjct: 113 GGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPD-IRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
SSS R ++V N D RT+D++ F +GK+ V ++ FAF+++E
Sbjct: 49 SSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRN----FAFIQYE 98
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 171 SNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
S + C +Y+GN+ + + + D+ + G+V + D + K FAF E+E
Sbjct: 2 SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYE 56
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
++VG+L P+ D+ +LF ++G + + + + +G FAF+ +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRG--FAFIYY 60
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNRKGPPFAFVEF 320
++VG + P++ D+++ F KFGK+ F L+ RK AF+++
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK---TAFIDY 292
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVT----FVDLKNRKGPPFAFVEFEXXX 332
SSS++ C ++VGN+P D + ++++ + G V D + K + F E++
Sbjct: 3 SSSSQRRC-VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
Query: 333 XXXXXXXXXXXXXXXGYRLRVEF 401
G +LRV+F
Sbjct: 62 TALSARRNLQSYEINGRQLRVDF 84
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
RI+VG L P++ +D++ F +FG +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDI 33
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
GG SS +Y+ NLP DI + ++ LF GK+
Sbjct: 259 GGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 294
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL 281
+ ++ E R+YVGNLP I + ++ +F + G V V +
Sbjct: 109 TQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVD-LKNR 290
SGG + +++ +YV NL + DI LF FGKV V LK+R
Sbjct: 49 SGGLAPSKST--LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDR 92
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFE 323
E +V L D KD+ D+F KFG V D K F FV FE
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFE 56
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVT 269
E RI+VG L D+ + ++ F ++GK+T
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKIT 39
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVT 269
E RI+VG L D+ + ++ F ++GK+T
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKIT 39
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 150 IMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVT-FVDLKNRKGPP--FAFVEF 320
+ G +R +YV NL D++ LF +FG++T V +K+ +G F FV F
Sbjct: 107 VSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNF 166
Query: 321 E 323
E
Sbjct: 167 E 167
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKN 287
++VGNLP ++ K I F KFG+V V +++
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRS 204
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFVE 317
+YV NLP +I ++++ D+F K+G + + + K KG F E
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYE 65
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFG 260
GG SS ++Y+ NL + +DI++LF + G
Sbjct: 99 GGGSSIETGTKLYISNLDYGVSNEDIKELFSEVG 132
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = +3
Query: 165 SSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGP----PFAFVEFEXXX 332
SSS ++++G L + + ++D F FG+V V + KG F FV+F
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 333 XXXXXXXXXXXXXXXGYRLRVEF 401
G LR+ F
Sbjct: 94 DALSAKDAMDGKGLLGRPLRISF 116
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL---KNRKGPPFAFV 314
+++V NLP + DI +LF + G V V++ K+ K FAFV
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKV-TFVDLKNRKG--PPFAFVEF 320
+YV NLP +I +++ F K+G + + V +K++ G F FV F
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 272
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 183 ECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDL-KNRKGP--PFAFVEF 320
E ++V NLP + + +I D F K G+V V L N KG FVEF
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEF 174
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV----TFVDLKNRKGPPFAFVEFE 323
GG S + R+YVGNL + ++ LF + GKV D + + F FV ++
Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 159 GGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV--TFVDLKNRKGPP--FAFVEF 320
GG S + ++ + NLP + DI+ +F G V F+ G P FAFV+F
Sbjct: 322 GGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPP-FAFVEFE 323
+Y+ NLP I ++D DLF ++ + V + KG AFV +E
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYE 66
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFE 323
+S E YVGNL D D+++ F +FG V ++ R F+ +++E
Sbjct: 2 ASTNVEFTCYVGNLESDTEENDLKNAFSQFGDVIHSNV--RFSFHFSLIDYE 51
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEF 320
++YVGNLP + +++ F KFG + D K + FAF+ F
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVD-LKNR 290
S +E +Y+G LPP + + +LF FG++ +K+R
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDR 515
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 168 SSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVD-LKNR 290
S +E +Y+G LPP + + +LF FG++ +K+R
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDR 515
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
GS N +I+VG L + + + F +FG +T V D + ++ F F+ ++
Sbjct: 25 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 82
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
GS N +I+VG L + + + F +FG +T V D + ++ F F+ ++
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 155
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 162 GSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
GS N +I+VG L + + + F +FG +T V D + ++ F F+ ++
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYD 155
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+Y+G +P +I+ F +FG V V + K K F F++FE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFE 109
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKV 266
+I+VG LP + D++D F +FG +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHI 266
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+IYVG LP R + + + F +FG++ V D + + + FV F+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFK 62
>At5g21940.1 68418.m02547 expressed protein supported by full length
cDNA GI:22531282 from [Arabidopsis thaliana]
Length = 264
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 542 LAGPQRPYARGRRRMLCRHL 601
LA P+ PY+R RR +LC +
Sbjct: 122 LAKPENPYSRRRRNLLCHQI 141
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNR--KGPP--FAFVEF 320
+ + NLP D R D++D F +FG + + L G P F FV++
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
SG S + + R+YVGNL + +++LF + GKV
Sbjct: 239 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKV 275
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 156 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKV 266
SG S + + R+YVGNL + +++LF + GKV
Sbjct: 247 SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKV 283
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+I+VG LP I ++ ++ F +FG + V D ++ F F+ F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+I+VG LP I ++ ++ F +FG + V D ++ F F+ F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+I+VG LP I ++ ++ F +FG + V D ++ F F+ F+
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 156 SGGSSSNRNE----CRIYVGNLPPDIRTKDIQDLFYKFGKVTFVD-LKNRKGPP--FAFV 314
SGG S+ E IYVGN+ +++Q F G V V L ++ G P FA+V
Sbjct: 89 SGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 148
Query: 315 EF 320
EF
Sbjct: 149 EF 150
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+I+VG LP + D + F +FG T V D ++ F F+ ++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD 157
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 189 RIYVGNLPPDIRTKDIQDLFYKFGKVTFV----DLKNRKGPPFAFVEFE 323
+I+VG LP + D + F +FG T V D ++ F F+ ++
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD 157
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKV 266
+++GNL PD+ K + D F FG +
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVI 138
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
I+VG L + +D++ F +FG++ V + KG FV+F
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKG--CGFVQF 348
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 192 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEF 320
I+VG L + +D++ F +FG++ V + KG FV+F
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKG--CGFVQF 346
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,666
Number of Sequences: 28952
Number of extensions: 190094
Number of successful extensions: 683
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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