Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J12
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   2.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   5.0  

>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 407 YFIKTNTIII-ERFEYGTESVPPRHFKLS 324
           +F++TN + + E FE  + S+  +HFKLS
Sbjct: 293 HFLETNILFLSEFFEVSSTSILAKHFKLS 321


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 151  NTGTFSPQSAGDEEEKXND*RXXLFSILNELNNXSXKECPSR 26
            NT T    ++  EEE  N     LFS+  E N+ + K  P R
Sbjct: 981  NTSTSDEDTSESEEESSNG----LFSLAREANSHASKSLPQR 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,098
Number of Sequences: 5004
Number of extensions: 33636
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)