Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J12
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788...    32   0.56 

>01_01_0997 +
           7884974-7885043,7885689-7885975,7886056-7886311,
           7886455-7886537,7886634-7886687,7887941-7888012,
           7889093-7889155,7889274-7889324,7889432-7889513,
           7889606-7889701,7889774-7889944,7890024-7890130,
           7890229-7890326,7890798-7891048,7891235-7891398,
           7891689-7891979,7892067-7892377,7892477-7892655,
           7893231-7893301
          Length = 918

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 410 TYFIKTNTIIIERFEYGTESVPPRHFKLSL*NTG 309
           ++ +K NT++ ER +   E  PPR  +LSL NTG
Sbjct: 652 SFKLKENTVVRERAKQVPERTPPRPRRLSLENTG 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,838
Number of Sequences: 37544
Number of extensions: 239421
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)