Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J12
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    42   5e-04
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    38   0.008
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    38   0.008
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    33   0.38 
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    29   6.2  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +2

Query: 146 CICTADYRPVCGTNGRTYSNRCQLKCARAT-----FAYDGPC 256
           C C +  RPVCGT+  TY+N C L+C + T     F Y+G C
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTC 60



 Score = 35.1 bits (77), Expect = 0.072
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLK---CARAT----FAYDGPC 256
           C   Y P+CGTNG T++N C L+   C  A      AY G C
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMC 813



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQL 217
           C  +Y PVC +NG+   N C+L
Sbjct: 872 CPKEYSPVCASNGQNIVNECEL 893



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLK 220
           C   + PVC T  RT+ N CQ K
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFK 279



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLK 220
           CT D  P+C ++  TY N CQ +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFR 612



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 152 CT-ADYRPVCGTNGRTYSNRCQLKCAR 229
           CT  ++ PVC TNG  Y N C  +  R
Sbjct: 119 CTNTEFDPVCDTNGSVYRNLCVFQMRR 145



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLKCAR 229
           C +D+ PVC + G T+ N C     R
Sbjct: 818 CPSDFSPVCDSKGSTHQNICHFGVKR 843


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLKCA 226
           CT +++ VCG++G+TYSN C+L+ A
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNA 492



 Score = 34.7 bits (76), Expect = 0.095
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLKCA 226
           CT +   VCGT+G+TY N C LK A
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLA 347



 Score = 34.7 bits (76), Expect = 0.095
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLK 220
           C    RPVC TNG T+ N C++K
Sbjct: 397 CEDVMRPVCATNGETFDNECEMK 419



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = +2

Query: 167 RPVCGTNGRTYSNRCQLK---CARATF---AYDGPC 256
           + VCGT+G TYS+ C +K   C ++ F   A++G C
Sbjct: 549 KEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 584



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 173 VCGTNGRTYSNRCQLK 220
           VCG++G TYSN C+LK
Sbjct: 880 VCGSDGTTYSNLCELK 895



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 119 ACTLGAESACICTADYRPVCGTNGRTYSNRCQL 217
           ACT      C  +++Y P+CG++G  Y+N+C L
Sbjct: 680 ACTC---PTCNLSSNY-PICGSDGIVYNNQCHL 708


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLKCA 226
           CT +++ VCG++G+TYSN C+L+ A
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNA 500



 Score = 34.7 bits (76), Expect = 0.095
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLKCA 226
           CT +   VCGT+G+TY N C LK A
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLA 355



 Score = 34.7 bits (76), Expect = 0.095
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQLK 220
           C    RPVC TNG T+ N C++K
Sbjct: 405 CEDVMRPVCATNGETFDNECEMK 427



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = +2

Query: 167 RPVCGTNGRTYSNRCQLK---CARATF---AYDGPC 256
           + VCGT+G TYS+ C +K   C ++ F   A++G C
Sbjct: 557 KEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKC 592



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 173 VCGTNGRTYSNRCQLK 220
           VCG++G TYSN C+LK
Sbjct: 819 VCGSDGTTYSNLCELK 834


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = +2

Query: 140 SACICTADYRPVCGTNGR---TYSNRCQLKCAR-----ATFAYDGPCGS 262
           S C C  +  PVC   G    TYSN+C  +CA+         Y+G C S
Sbjct: 23  STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCS 71


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 184  QRQDLQQQVPTEMCESHICLRRAMRE 261
            Q Q ++ Q+ TEMC + +CLR   RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 184  QRQDLQQQVPTEMCESHICLRRAMRE 261
            Q Q ++ Q+ TEMC + +CLR   RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 184  QRQDLQQQVPTEMCESHICLRRAMRE 261
            Q Q ++ Q+ TEMC + +CLR   RE
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECRE 3641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,316
Number of Sequences: 27780
Number of extensions: 209948
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)