Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J12
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              34   0.002
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   5.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.3 bits (75), Expect = 0.002
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 152 CTADYRPVCGTNGRTYSNRCQL 217
           C   +RPVC +NG+ Y+N C+L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 377 ERFEYGTESVPPRHFKL 327
           +RFEY T ++P  H+++
Sbjct: 252 QRFEYFTRTIPSDHYQV 268


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +2

Query: 113 LVACTLGAESACICTADYRPVCGTNGRTYSNRCQLKCARATF 238
           +V C  G +  C    +Y  +C    +   N+C + C+   F
Sbjct: 58  IVQCAKGPDELCGGPQNYLGICAEGMQCSCNKC-IGCSAEKF 98


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 330 TKPIKYGTSREIRDVW 283
           T+PIKY   +  R VW
Sbjct: 289 TQPIKYAKHKNNRRVW 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,665
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)