Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J12
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03130.1 68417.m00426 BRCT domain-containing protein contains...    35   0.088
At1g07540.1 68414.m00807 telomere-binding protein, putative simi...    28   7.6  

>At4g03130.1 68417.m00426 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 765

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 227 SHISVGTCCCKSCRWYHKQAYNRRCKYRHFQPPK 126
           +++SV TC    C W H +A   R   RH  PP+
Sbjct: 427 ANVSVKTCLLNLCEWRHPRAKRSRLMQRHHVPPR 460


>At1g07540.1 68414.m00807 telomere-binding protein, putative similar
           to telomere binding protein TBP1 [Nicotiana glutinosa]
           gi|23664357|gb|AAN39330
          Length = 622

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  FXCSVHSKSKTMXTFNRSXFPPRRLHFG 132
           F   +  KS  M +FNRS  P +  HFG
Sbjct: 108 FVSEILQKSHEMQSFNRSPSPLKEFHFG 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,959,136
Number of Sequences: 28952
Number of extensions: 185381
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)