Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J10
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.6  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   6.0  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   6.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 619 PXXXXGXXPXPPXXFXXLGAXXPPPKGXPPPP 524
           P    G  P PP      GA  PPP   PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 259 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 89
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 156 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPXDC*E-KLWHDGRQLQRIL*KSEAR 332
           K+D  KE+ SL    E     IE  R ++   L P      K W DGR+  RIL ++E R
Sbjct: 182 KKDDTKEEISLEAFIE-----IE--RHRLGPNLTPVTEENFKKWSDGRR-DRILKQAEER 233

Query: 333 GSTESL-RSNFLVSKYITPN 389
            S  ++ RSN    +Y   N
Sbjct: 234 RSNRAVGRSNLSGREYFESN 253


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 141 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAP 260
           V A +K+D  +E  S   L      TIE+L+ K E+   P
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPP 167


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 229 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 101
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,898
Number of Sequences: 5004
Number of extensions: 42908
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)