Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J10
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 29 3.6
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 29 3.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 24 4.2
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.4
07_01_0080 + 587674-588510 28 8.4
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 8.4
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 8.4
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 525 GGGGXPLGGGXXAPKXKKXFGGLG 596
GGGG P GGG + KK GG G
Sbjct: 317 GGGGAPNGGGNHPAQGKKGGGGQG 340
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 171 KEDNSLNTLAESAKKTIEELREKVESALAPXDC*EKLWHDGR 296
+E N L+ L + +K + ELR KVE A+ KL+ DG+
Sbjct: 49 EESNFLDDLKDGERKALAELRAKVEEAIVDG----KLFDDGK 86
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 24.2 bits (50), Expect(2) = 4.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 595 PXPPXXFXXLGAXXPPPKGXPPP 527
P PP + + PPP PPP
Sbjct: 92 PPPPPPPYGVNSSQPPPPPPPPP 114
Score = 23.4 bits (48), Expect(2) = 4.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 553 PPPKGXPPPP 524
PPP PPPP
Sbjct: 116 PPPSAPPPPP 125
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 4.8
Identities = 27/113 (23%), Positives = 33/113 (29%)
Frame = -2
Query: 861 PLGXTXPTXPGXGXGGXEGPXQTPPXGXXXXXXKKXPPPXPXXXXXKKXXKXXXXXXXXP 682
P P PG G GP + PP + PPP P
Sbjct: 245 PEANKPPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPP---NAPMGMPPRIPPPPVG 301
Query: 681 GXXGXPKXXXLSXFPXKXIFFPXXXXGXXPXXQXFFXXWXPXXPPPKGXPXPR 523
G P L+ P + I P G F P PP +G P P+
Sbjct: 302 GTQPPPPPPPLANGPPRSIPPPPMTGGAMAN----FTPGAPPRPPMQGFPGPQ 350
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 595 PXPPXXFXXLGAXXPPPKGXPPPP 524
P PP PPPK PPPP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPP 339
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 589 PPXXFXXLGAXXPPPKGXPPPP 524
PP PPPKG PPPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPP 348
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 595 PXPPXXFXXLGAXXPPPKGXPPPP 524
P PP G+ PPP PPPP
Sbjct: 92 PPPPPPPPSSGSPPPPPPPPPPPP 115
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 168 PKEDNSLNTLAESAKKTIEELREKVE 245
PKE ++ T+A + +KT EE+R +++
Sbjct: 91 PKESSTATTMAAATEKTAEEIRRELQ 116
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 861 PLGXTXPTXPGXGXGGXEGPXQTPP 787
P T PT PG G G P TPP
Sbjct: 160 PSSDTSPTTPGGGGGYSPTPSDTPP 184
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 861 PLGXTXPTXPGXGXGGXEGPXQTPP 787
P T PT PG G G P TPP
Sbjct: 238 PSSDTSPTTPGGGGGYTPTPSDTPP 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,224
Number of Sequences: 37544
Number of extensions: 395523
Number of successful extensions: 1752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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