Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J10
         (868 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   0.19 
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     31   0.92 
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              31   0.92 
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   0.92 
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   1.6  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   4.9  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   8.6  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 26.6 bits (56), Expect(2) = 0.19
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 553 PPPKGXPPPP 524
           PPP+G PPPP
Sbjct: 498 PPPRGMPPPP 507



 Score = 25.8 bits (54), Expect(2) = 0.19
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 619 PXXXXGXXPXPPXXFXXLGAXXPPPKGXPPP 527
           P    G  P P   +       PPP G PPP
Sbjct: 462 PGGMRGMPPPPMGMYPPPRGFPPPPFGPPPP 492


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 595 PXPPXXFXXLGAXXPPPKGXPPPP 524
           P PP      G   PPPK  PPPP
Sbjct: 250 PPPPMRGPTSGGEPPPPKNAPPPP 273


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 595 PXPPXXFXXLGAXXPPPKGXPPPP 524
           P PP      G   PPPK  PPPP
Sbjct: 162 PPPPMRGPTSGGEPPPPKNAPPPP 185


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 619 PXXXXGXXPXPPXXFXXLGAXXPPPKGXPPPP 524
           P    G  P PP      GA  PPP   PPPP
Sbjct: 294 PPPADGSAPAPPPPPPPGGAPPPPPPPPPPPP 325


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 851  EPSPPNRAXVXGGXKGXXKPLPGGXIXXXXKXXPPPPPG 735
            +P PP    V        +PLPG  +       P PPPG
Sbjct: 911  QPQPPPGNQVNPPMSSQPQPLPGNQVNPPMSSQPQPPPG 949


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -3

Query: 848  PSPPNRAXVXGGXKGXXKPLPGGXIXXXXKXXPPPPPGXXK 726
            P P   A   GG      P PGG         PPPPP   K
Sbjct: 957  PPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPPMRK 997


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 619 PXXXXGXXPXPPXXFXXLGAXXPPPKGXPPPP 524
           P    G  P PP          PP +G PPPP
Sbjct: 318 PPARMGTAPPPPPPSRSSQRPPPPSRGAPPPP 349


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 KRDAPKEDNSLNTLAESAKKTIEELREKVE 245
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,836,459
Number of Sequences: 59808
Number of extensions: 344342
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)