Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J10
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    26   5.6  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    24   6.6  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    24   6.7  
At2g46180.1 68415.m05742 intracellular protein transport protein...    28   7.0  
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    28   9.3  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 26.2 bits (55), Expect(2) = 5.6
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -3

Query: 848 PSPPNRAXVXGGXKGXXKP-LPGGXIXXXXKXXPPPPP 738
           P PP +A +    K    P LP           PPPPP
Sbjct: 684 PPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPPPP 721



 Score = 20.6 bits (41), Expect(2) = 5.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 752 PPPPPG 735
           PPPPPG
Sbjct: 739 PPPPPG 744


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 24.2 bits (50), Expect(2) = 6.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 595 PXPPXXFXXLGAXXPPPKGXPPP 527
           P PP       A  PPP   PPP
Sbjct: 31  PAPPTPTTPPPAATPPPVSAPPP 53



 Score = 22.6 bits (46), Expect(2) = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 553 PPPKGXPPPP 524
           PPP   PPPP
Sbjct: 87  PPPVASPPPP 96


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 24.2 bits (50), Expect(2) = 6.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 595 PXPPXXFXXLGAXXPPPKGXPPP 527
           P PP       A  PPP   PPP
Sbjct: 31  PAPPTPTTPPPAATPPPVSAPPP 53



 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 553 PPPKGXPPPP 524
           PPP   PPPP
Sbjct: 87  PPPVASPPPP 96


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
 Frame = +3

Query: 147 AFVKRDAPKEDNSLNTL---AESAKKTIEELREKV---ESALAPX-DC*EKLWHDGRQLQ 305
           A  K DA K    L  +    ES+KK  EE+  KV   E+  A   +   K+  D  +++
Sbjct: 491 AVAKEDAMKLSARLKDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVEDDNAKVR 550

Query: 306 RIL*KSEARGSTESLRSNFLVSKYI 380
           R+L +S  R +  S+ S+FLV + I
Sbjct: 551 RVLEQSMTRLNRMSMDSDFLVDRRI 575


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +3

Query: 525 GGGGXPL----GGGXXAPKXKKXFGGLGXXPXXXXGKK 626
           GGGG PL    GGG   P   K  GG+        GKK
Sbjct: 348 GGGGHPLDGKMGGGGGGPNGNKGGGGVQMNGGPNGGKK 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,289
Number of Sequences: 28952
Number of extensions: 273970
Number of successful extensions: 1214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)