Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J07
         (895 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...    42   0.016
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...    34   4.3  
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...    33   7.4  
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...    33   9.8  
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...    33   9.8  
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...    33   9.8  

>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 24/75 (32%), Positives = 27/75 (36%)
 Frame = -1

Query: 544 TFKGXGXXXKVXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXX 365
           T+ G      V   G     LGGF    P      +N   LK  F+  F G    FFP  
Sbjct: 354 TYYGVAHFHYVLSMGAVFSILGGFIYWFPMFFGLMMNEYFLKIHFYLTFIGVNLIFFPQH 413

Query: 364 FXGXXGXPXXXSXXP 320
           F G  G P   S  P
Sbjct: 414 FLGLSGMPRRYSDYP 428


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 20/65 (30%), Positives = 22/65 (33%)
 Frame = -1

Query: 514 VXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXXFXGXXGXPXX 335
           V   G     +GGF    P      L+    K  F   F G    FFP  F G  G P  
Sbjct: 380 VLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRR 439

Query: 334 XSXXP 320
            S  P
Sbjct: 440 YSDYP 444


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 21/65 (32%), Positives = 21/65 (32%)
 Frame = -1

Query: 514 VXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXXFXGXXGXPXX 335
           V   G     L GF    P      LN    K  F   F G    FFP  F G  G P  
Sbjct: 381 VLSMGAVFAILAGFTHWFPLFTGYTLNSAWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRR 440

Query: 334 XSXXP 320
            S  P
Sbjct: 441 YSDYP 445


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 21/65 (32%), Positives = 21/65 (32%)
 Frame = -1

Query: 514 VXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXXFXGXXGXPXX 335
           V   G     L GF    P      LN    K  F   F G    FFP  F G  G P  
Sbjct: 381 VLSMGAVFAILAGFTHWFPLFTGYTLNNAWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRR 440

Query: 334 XSXXP 320
            S  P
Sbjct: 441 YSDYP 445


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 18/65 (27%), Positives = 22/65 (33%)
 Frame = -1

Query: 514 VXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXXFXGXXGXPXX 335
           V   G       G++   P       +    K QF+  F G    FFP  F G  G P  
Sbjct: 487 VLSMGAVFAMFAGWYFWSPKMLGFNYDLNLAKMQFWLLFIGVNATFFPQHFLGLQGMPRR 546

Query: 334 XSXXP 320
            S  P
Sbjct: 547 ISDYP 551


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 20/65 (30%), Positives = 21/65 (32%)
 Frame = -1

Query: 514 VXXXGXXXXXLGGFFXXXPXXXXXXLNFXKLKXQFFXXFXGXKKXFFPXXFXGXXGXPXX 335
           V   G     + GF    P      LN    K  F   F G    FFP  F G  G P  
Sbjct: 380 VLSMGAVFAIMAGFVHWFPLFTGYTLNSVWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRR 439

Query: 334 XSXXP 320
            S  P
Sbjct: 440 YSDYP 444


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,195,488
Number of Sequences: 1657284
Number of extensions: 1690168
Number of successful extensions: 421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)