Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J06
         (938 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.       133   6e-33
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    27   1.1  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   4.4  

>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score =  133 bits (322), Expect = 6e-33
 Identities = 66/70 (94%), Positives = 66/70 (94%)
 Frame = +1

Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
           VLRDNIQG TKPAIRRLARRGGVKRISGLIYEE R VLKVFLENVIRDAV YTEHAKRKT
Sbjct: 22  VLRDNIQGTTKPAIRRLARRGGVKRISGLIYEERRGVLKVFLENVIRDAVAYTEHAKRKT 81

Query: 328 VTAMDVVYAL 357
           VTAMDVVYAL
Sbjct: 82  VTAMDVVYAL 91


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 135 TAPESSQR*YSRNNEACHSKIGATRRRQTYIRPDLRGNTQRSKGFS 272
           T   ++ R YSR NE C S  G   +R++ ++P  +G   +S  FS
Sbjct: 224 TPTSTTMRDYSRKNENCSSSGG---QRES-LKPKPKGKVAKSSEFS 265


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +2

Query: 128 ARNGTGKFSEIIFKE*RSLPFEDWR-----DAAASN 220
           +R GTG  S  + KE R    E+W+     DAAA N
Sbjct: 866 SRRGTGVSSSELRKEERQRTIEEWQTTWDADAAADN 901


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,775
Number of Sequences: 2352
Number of extensions: 6048
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)