Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_J06
(938 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59970.1 68418.m07521 histone H4 identical to histone H4 from... 152 3e-37
At5g59690.1 68418.m07483 histone H4 identical to histone H4 from... 152 3e-37
At3g53730.1 68416.m05935 histone H4 identical to histone H4 from... 152 3e-37
At3g46320.1 68416.m05015 histone H4 nearly identical to histone ... 152 3e-37
At3g45930.1 68416.m04970 histone H4 identical to histone H4 from... 152 3e-37
At2g28740.1 68415.m03493 histone H4 identical to histone H4 from... 152 3e-37
At1g07820.2 68414.m00848 histone H4 identical to histone H4 from... 152 3e-37
At1g07820.1 68414.m00847 histone H4 identical to histone H4 from... 152 3e-37
At1g07660.1 68414.m00823 histone H4 identical to histone H4 from... 152 3e-37
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 34 0.16
At5g50930.1 68418.m06316 hypothetical protein similar to unknown... 29 3.4
At5g24450.1 68418.m02882 transcription factor-related low simila... 29 4.4
>At5g59970.1 68418.m07521 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At5g59690.1 68418.m07483 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At3g53730.1 68416.m05935 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At3g46320.1 68416.m05015 histone H4 nearly identical to histone H4
[Arabidopsis thaliana] GI:166740
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At3g45930.1 68416.m04970 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At2g28740.1 68415.m03493 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At1g07820.2 68414.m00848 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At1g07820.1 68414.m00847 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At1g07660.1 68414.m00823 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 152 bits (369), Expect = 3e-37
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +1
Query: 148 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 327
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 328 VTAMDVVYALKRQGRTL 378
VTAMDVVYALKRQGRTL
Sbjct: 82 VTAMDVVYALKRQGRTL 98
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 171 NNEACHSKIGATRRRQTYIR-PDLRGNT-QRSKG-FSRERYPGRGYLHRAR*KENRNSHG 341
NN C+SK G + R+ Y + DL G+T R+KG FSR + +AR K+ N G
Sbjct: 534 NNSCCNSKKGRKKARKHYTQDDDLMGSTITRNKGKFSRSSQKKKTQKPKARTKKRNNRGG 593
>At5g50930.1 68418.m06316 hypothetical protein similar to unknown
protein (emb|CAB61034.1)
Length = 242
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 199 ARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 363
A++ G++ I G + + + ENV +D + HA RK V DVV + R
Sbjct: 140 AKKNGME-IGGPVVACVADLAFKYAENVAKDLELFAHHAGRKVVNMDDVVLSAHR 193
>At5g24450.1 68418.m02882 transcription factor-related low
similarity to transcription factor IIIC63 [Homo sapiens]
GI:5281316
Length = 545
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 291 VPDNVLEKNL*NAACFLVNQAGYTFDAAASRQSSNG--RLRYSLNIISENFPVPFRASLP 118
+ + + NL + F+V+ GY + + ++ G + + S + FR P
Sbjct: 4 IENGTISGNLPSKEAFVVHYPGYPSSISRAVETLGGIQGITTARESTSNKLELHFRPEDP 63
Query: 117 QAFPAFTATRHC 82
A PA+ RHC
Sbjct: 64 SAHPAYGERRHC 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,395,113
Number of Sequences: 28952
Number of extensions: 142833
Number of successful extensions: 433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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