Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J03
         (920 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5WTS3 Cluster: Conserved proline rich protein; n=8; My...    35   3.4  
UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1; ...    34   5.9  
UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4; C...    34   5.9  
UniRef50_Q7P5T9 Cluster: Putative uncharacterized protein FNV086...    33   7.8  
UniRef50_Q7R5E0 Cluster: GLP_587_305_8206; n=6; Giardia lamblia ...    33   7.8  

>UniRef50_A5WTS3 Cluster: Conserved proline rich protein; n=8;
           Mycobacterium|Rep: Conserved proline rich protein -
           Mycobacterium tuberculosis (strain F11)
          Length = 129

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 756 PGGGXGXVFXXXXXPPPXGXGXGWXXSPXXRWGGPQG 866
           PG G G VF     PPP G G G+   P     GP G
Sbjct: 83  PGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTG 119


>UniRef50_O25547 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter pylori|Rep: Putative uncharacterized
           protein - Helicobacter pylori (Campylobacter pylori)
          Length = 140

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 143 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 322
           H +  +D  K    L  L E   +  EEL    ES    +   + +   + +F ++YK++
Sbjct: 69  HTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128

Query: 323 K 325
           K
Sbjct: 129 K 129


>UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4;
           Clostridium botulinum|Rep: Propanediol utilization
           protein - Clostridium botulinum A str. ATCC 3502
          Length = 279

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 170 KEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMV-DSFN--EFYKN 319
           KE NS+  L    K++IE+   K  S ++ E++K+NF  +  D FN  E YKN
Sbjct: 174 KEMNSIEDLIPDLKESIEKRNIKNISRISEESIKRNFHRLTYDYFNTVEKYKN 226


>UniRef50_Q7P5T9 Cluster: Putative uncharacterized protein FNV0869;
           n=1; Fusobacterium nucleatum subsp. vincentii ATCC
           49256|Rep: Putative uncharacterized protein FNV0869 -
           Fusobacterium nucleatum subsp. vincentii ATCC 49256
          Length = 129

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 149 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKP 328
           F+  + P   NS   +  + KKT ++    + S +  + +K +    + + N+F+K LK 
Sbjct: 3   FIAGNTPSSKNSKRIITITNKKTGKKTTRLINSEVTEKYIKNSKADWLINKNKFFKMLKD 62

Query: 329 AEAPKA*EVIF 361
            E P   E+ F
Sbjct: 63  KEKPYKVELYF 73


>UniRef50_Q7R5E0 Cluster: GLP_587_305_8206; n=6; Giardia lamblia ATCC
            50803|Rep: GLP_587_305_8206 - Giardia lamblia ATCC 50803
          Length = 2633

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -3

Query: 186  RLLSSLGASRLTNACTLARQIANKIISSLFILDI*ERLHE---SATRITNSXLKDSL 25
            R L+   A+ +T+ C L   I +  ISSL++  + E L+    S+ R+TNS  KD L
Sbjct: 1440 RFLALFFAALITDHCKLVEHIESHFISSLYVTSV-ETLYSTIPSSDRLTNSNEKDCL 1495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,215,204
Number of Sequences: 1657284
Number of extensions: 8880710
Number of successful extensions: 23904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23826
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)