Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J03
         (920 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   7.0  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   9.2  

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 155 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 274
           KRDAP  DN       S KK    L   +E+  +P +  K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 750 PXPGGGXGXVFXXXXXPPPXGXGXGWXXSP--XXRWGGP 860
           P PG G G        PPP G G GW   P    + GGP
Sbjct: 504 PPPGAGQGG------GPPPPGAGQGWGQPPPGAGQGGGP 536



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 750 PXPGGGXGXVFXXXXXPPPXGXGXGWXXSP--XXRWGGP 860
           P PG G G        PPP G G GW   P    + GGP
Sbjct: 537 PPPGAGQGG------GPPPPGAGQGWGQPPPGAGQGGGP 569


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 155 KRDAPKEDNSLNTLAESAKKTIEELREKVE 244
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,030
Number of Sequences: 59808
Number of extensions: 264136
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)